miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 4374 0.7 0.541176
Target:  5'- aGCGCGACgGCggcgGCgGGAGCCGgaGUGCu -3'
miRNA:   3'- -UGCGCUGgUG----UG-CCUCGGCggCACGu -5'
15709 5' -61.3 NC_004065.1 + 5653 0.66 0.793626
Target:  5'- aACGCcGCCACAUGGAcauccuGCaCaCCGUGCu -3'
miRNA:   3'- -UGCGcUGGUGUGCCU------CG-GcGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 6488 0.7 0.550547
Target:  5'- uCGCGaACCGCACGGucgggucGCgGCCG-GCAc -3'
miRNA:   3'- uGCGC-UGGUGUGCCu------CGgCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 8266 0.67 0.728531
Target:  5'- cCGUGACCuuucugcucaucggACugauCGGGGCCGCgGUGUu -3'
miRNA:   3'- uGCGCUGG--------------UGu---GCCUCGGCGgCACGu -5'
15709 5' -61.3 NC_004065.1 + 8738 0.67 0.740495
Target:  5'- aACGUGACgAC-CGGAgGCCGUgGUGgCGg -3'
miRNA:   3'- -UGCGCUGgUGuGCCU-CGGCGgCAC-GU- -5'
15709 5' -61.3 NC_004065.1 + 21991 0.66 0.793626
Target:  5'- cCGCcacGGCCACgccgACGGucaucGCCGCCG-GCAc -3'
miRNA:   3'- uGCG---CUGGUG----UGCCu----CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 22486 0.75 0.312511
Target:  5'- gGCGCGACgACGCGGAGCgCGCg--GCGa -3'
miRNA:   3'- -UGCGCUGgUGUGCCUCG-GCGgcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 25507 0.77 0.223656
Target:  5'- -gGCGACCACgACGGucUCGCCGUGCGc -3'
miRNA:   3'- ugCGCUGGUG-UGCCucGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 25593 0.7 0.535579
Target:  5'- -gGCGGCUgaGCAgcaggccgaucucgaUGGGGCCuGCCGUGCAg -3'
miRNA:   3'- ugCGCUGG--UGU---------------GCCUCGG-CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 29046 0.72 0.440002
Target:  5'- uCGCGACCcguCACcacgcaccgauccuGGAGCCGCCGcGCu -3'
miRNA:   3'- uGCGCUGGu--GUG--------------CCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 29272 0.71 0.504276
Target:  5'- -aGCGACCgACGCGuGAGCCGCCu---- -3'
miRNA:   3'- ugCGCUGG-UGUGC-CUCGGCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 30074 0.67 0.722036
Target:  5'- gACGgGACCGCcgugGCGGAGCgcgCGCUGaUGUg -3'
miRNA:   3'- -UGCgCUGGUG----UGCCUCG---GCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 30386 0.66 0.802075
Target:  5'- gACGUGACCugGCGGAucGCgGacaaCGUGg- -3'
miRNA:   3'- -UGCGCUGGugUGCCU--CGgCg---GCACgu -5'
15709 5' -61.3 NC_004065.1 + 31531 0.67 0.731304
Target:  5'- cGCGgGGCUaccccgGCAUGGAGCUGCUGgugGUg -3'
miRNA:   3'- -UGCgCUGG------UGUGCCUCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 33809 0.66 0.792774
Target:  5'- gACGUggGACgACGCGGAcaaGCuggccaucaaccaCGCCGUGCGc -3'
miRNA:   3'- -UGCG--CUGgUGUGCCU---CG-------------GCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 35560 0.73 0.377558
Target:  5'- gGCGUGAgCG-GCGGcGCCGCCGUGCc -3'
miRNA:   3'- -UGCGCUgGUgUGCCuCGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 35945 0.66 0.793626
Target:  5'- uCGCGGCCGCAggucguCGGAcucgcGCCGCUGcuccUGCc -3'
miRNA:   3'- uGCGCUGGUGU------GCCU-----CGGCGGC----ACGu -5'
15709 5' -61.3 NC_004065.1 + 36106 0.73 0.401173
Target:  5'- cCGUGGCgGCaACGGGGCCGCUGccgGCGg -3'
miRNA:   3'- uGCGCUGgUG-UGCCUCGGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 37926 0.66 0.791921
Target:  5'- cCGCGAuccucguguugguCCACAucucguucUGGAucucgucGCCGCCGUGUAa -3'
miRNA:   3'- uGCGCU-------------GGUGU--------GCCU-------CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 38455 0.68 0.683408
Target:  5'- cGCGCGccgaucACCGCACGcgugcggaagaguGAGCCGCCcuUGCu -3'
miRNA:   3'- -UGCGC------UGGUGUGC-------------CUCGGCGGc-ACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.