miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 39049 0.66 0.802075
Target:  5'- uCGUGACCccgcACACGGAGaaggcauucaUCGCCugGUGCGc -3'
miRNA:   3'- uGCGCUGG----UGUGCCUC----------GGCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 41272 0.72 0.425708
Target:  5'- uCGCGAUCGCccuggUGGGcuucGCCGCCGUGCGc -3'
miRNA:   3'- uGCGCUGGUGu----GCCU----CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 45544 0.71 0.474674
Target:  5'- cCGCGGCgGCgGCGGcAGCCGCCcagaaacauucugaGUGCAu -3'
miRNA:   3'- uGCGCUGgUG-UGCC-UCGGCGG--------------CACGU- -5'
15709 5' -61.3 NC_004065.1 + 47728 0.69 0.636457
Target:  5'- aGCGUGGCCuugauCACGGGGUCagaggccaugGCCGgGCAg -3'
miRNA:   3'- -UGCGCUGGu----GUGCCUCGG----------CGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 55905 0.66 0.78505
Target:  5'- cCGC-ACCucuCACGGAGUccgCGCCG-GCAg -3'
miRNA:   3'- uGCGcUGGu--GUGCCUCG---GCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 58619 0.67 0.740495
Target:  5'- gACGCG--CGCgGCGGAGUCGCCGgucucGCGg -3'
miRNA:   3'- -UGCGCugGUG-UGCCUCGGCGGCa----CGU- -5'
15709 5' -61.3 NC_004065.1 + 62473 0.7 0.569431
Target:  5'- -gGCGACgGCA-GGAGCgGCCGcgGCGg -3'
miRNA:   3'- ugCGCUGgUGUgCCUCGgCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 64433 0.66 0.757724
Target:  5'- uCGCGGCCACGCaGAcGCugaggaacugucgCGCCGUGg- -3'
miRNA:   3'- uGCGCUGGUGUGcCU-CG-------------GCGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 64641 0.69 0.617227
Target:  5'- gGCcauCGACCGCGCGu--CCGCCGUGCu -3'
miRNA:   3'- -UGc--GCUGGUGUGCcucGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 65461 0.66 0.78505
Target:  5'- aGCGCGAagCGguCGGcGCCGCCGccgGCu -3'
miRNA:   3'- -UGCGCUg-GUguGCCuCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 65624 0.68 0.655675
Target:  5'- cACGCuggaccaggagGACCugACGGAcccGCUGCCGcUGCc -3'
miRNA:   3'- -UGCG-----------CUGGugUGCCU---CGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 66604 0.66 0.793626
Target:  5'- -gGCGGCCAcCGCGGcGuuGCCGacGCu -3'
miRNA:   3'- ugCGCUGGU-GUGCCuCggCGGCa-CGu -5'
15709 5' -61.3 NC_004065.1 + 67589 0.67 0.740495
Target:  5'- gACGCuGAucUCGCcguCGGAGCUGCUgGUGCAg -3'
miRNA:   3'- -UGCG-CU--GGUGu--GCCUCGGCGG-CACGU- -5'
15709 5' -61.3 NC_004065.1 + 68166 0.67 0.73958
Target:  5'- uCGCGGCgGCgcgcgcgACGGAGCUGUCG-GCc -3'
miRNA:   3'- uGCGCUGgUG-------UGCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 68330 0.66 0.78505
Target:  5'- uCGUGGCUGCG-GGAGCUGCUGcaGCAg -3'
miRNA:   3'- uGCGCUGGUGUgCCUCGGCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 71173 0.68 0.684359
Target:  5'- aACGUGACCGCGuCGGucAGCaGCC-UGCAc -3'
miRNA:   3'- -UGCGCUGGUGU-GCC--UCGgCGGcACGU- -5'
15709 5' -61.3 NC_004065.1 + 77742 0.67 0.749604
Target:  5'- uGCGCaacGCCACgaccACGGuguGCCuGCUGUGCGa -3'
miRNA:   3'- -UGCGc--UGGUG----UGCCu--CGG-CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 79621 0.66 0.758621
Target:  5'- cCGCuGCgCGCGCGGAcGCUGCgggCGUGCGu -3'
miRNA:   3'- uGCGcUG-GUGUGCCU-CGGCG---GCACGU- -5'
15709 5' -61.3 NC_004065.1 + 85092 0.66 0.76754
Target:  5'- uACGUGAUCuuCACGGAGCUGaucuucuucugCGUGCu -3'
miRNA:   3'- -UGCGCUGGu-GUGCCUCGGCg----------GCACGu -5'
15709 5' -61.3 NC_004065.1 + 87538 0.69 0.62684
Target:  5'- aGCGCGuGCCAgACGGgguuAGCCGCC-UGUc -3'
miRNA:   3'- -UGCGC-UGGUgUGCC----UCGGCGGcACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.