miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 88412 0.68 0.655675
Target:  5'- cCGCcACCGCcggcaGCGGAgcccGCCGCCGUcGCGu -3'
miRNA:   3'- uGCGcUGGUG-----UGCCU----CGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 90378 0.69 0.617227
Target:  5'- cACGCG-CCGCACagcuuGGAGCCGgCGUuCAc -3'
miRNA:   3'- -UGCGCuGGUGUG-----CCUCGGCgGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 91180 0.66 0.758621
Target:  5'- -gGCGACgGcCGCGGAagcGCCGUcggCGUGCGc -3'
miRNA:   3'- ugCGCUGgU-GUGCCU---CGGCG---GCACGU- -5'
15709 5' -61.3 NC_004065.1 + 91664 0.66 0.758621
Target:  5'- gGCGCGAUgACGacgGGGGUCGCCuuGUcGCAg -3'
miRNA:   3'- -UGCGCUGgUGUg--CCUCGGCGG--CA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 93533 0.78 0.185666
Target:  5'- gACGCugggguccaGACCGC-CGGAGCCGCCGaUGCu -3'
miRNA:   3'- -UGCG---------CUGGUGuGCCUCGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 95151 0.66 0.76754
Target:  5'- -aGCGACaguucuCGuCGccGCCGCCGUGCAg -3'
miRNA:   3'- ugCGCUGgu----GU-GCcuCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 96035 0.66 0.78505
Target:  5'- cCGCGugCguggGCACGGgccccGGCCGCCGauauagGCu -3'
miRNA:   3'- uGCGCugG----UGUGCC-----UCGGCGGCa-----CGu -5'
15709 5' -61.3 NC_004065.1 + 99544 0.66 0.802075
Target:  5'- gGCGCucccgucucGCCGCgGCGGAcgGCCGUgGUGCGu -3'
miRNA:   3'- -UGCGc--------UGGUG-UGCCU--CGGCGgCACGU- -5'
15709 5' -61.3 NC_004065.1 + 99850 0.67 0.703304
Target:  5'- -aGCGuCUGCGCcccGAucGCCGCCGUGCGa -3'
miRNA:   3'- ugCGCuGGUGUGc--CU--CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 99937 0.68 0.693854
Target:  5'- gACGCcgGACCGCcgcgGCGGcGGCUGCUGcUGCGa -3'
miRNA:   3'- -UGCG--CUGGUG----UGCC-UCGGCGGC-ACGU- -5'
15709 5' -61.3 NC_004065.1 + 103646 0.73 0.409252
Target:  5'- uGCGCGAgCAgGCGG--UCGCCGUGCGc -3'
miRNA:   3'- -UGCGCUgGUgUGCCucGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 104537 0.75 0.322047
Target:  5'- cUGCuuCCACACGGAgaacgggcaggugcgGCCGCUGUGCAc -3'
miRNA:   3'- uGCGcuGGUGUGCCU---------------CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 104903 0.69 0.598037
Target:  5'- -gGCGACgGCGCGGuGgUGCCGgcgGCGu -3'
miRNA:   3'- ugCGCUGgUGUGCCuCgGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 105190 0.75 0.305831
Target:  5'- cGCGaugGACCAgGCGGAGCCGCUGUuCGu -3'
miRNA:   3'- -UGCg--CUGGUgUGCCUCGGCGGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 105562 0.68 0.674826
Target:  5'- gGCGCaGCgGCACGGcgcGCCGUCG-GCGg -3'
miRNA:   3'- -UGCGcUGgUGUGCCu--CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 106350 0.69 0.588472
Target:  5'- gGCGCuGCUGCACGGgcAGCgCGCCacGUGCGa -3'
miRNA:   3'- -UGCGcUGGUGUGCC--UCG-GCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 109595 0.66 0.78505
Target:  5'- gGCGUaucaGGCCGCGCucgacccccGGGCCGCgGUGCc -3'
miRNA:   3'- -UGCG----CUGGUGUGc--------CUCGGCGgCACGu -5'
15709 5' -61.3 NC_004065.1 + 109890 0.7 0.5226
Target:  5'- cCGCGGCCGCGucgggggguccCGGcucguccgccgcGGCCGCCGUcGCGu -3'
miRNA:   3'- uGCGCUGGUGU-----------GCC------------UCGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 110295 0.66 0.776352
Target:  5'- cGCGCGACCcggccguCACGGucucgcagcucuGGCCGgggcUCGUGCu -3'
miRNA:   3'- -UGCGCUGGu------GUGCC------------UCGGC----GGCACGu -5'
15709 5' -61.3 NC_004065.1 + 111915 0.7 0.5226
Target:  5'- cGCGCGGCgACgagagacgccAUGGGcGCCGCCGUcGCGg -3'
miRNA:   3'- -UGCGCUGgUG----------UGCCU-CGGCGGCA-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.