Results 61 - 80 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 113438 | 0.71 | 0.468506 |
Target: 5'- -aGCGGCgGC-CGGGGggcCCGCCGUGCc -3' miRNA: 3'- ugCGCUGgUGuGCCUC---GGCGGCACGu -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 113703 | 0.7 | 0.569431 |
Target: 5'- aACGUGACCAUucccguaggaAUGGAGCUcgGCCGagUGCAc -3' miRNA: 3'- -UGCGCUGGUG----------UGCCUCGG--CGGC--ACGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 114867 | 0.66 | 0.758621 |
Target: 5'- -gGCGACg--ACGGuGCCGCCGgccgGCGg -3' miRNA: 3'- ugCGCUGgugUGCCuCGGCGGCa---CGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 115039 | 0.66 | 0.776352 |
Target: 5'- cGCGCGGCCGC-CaGGGCCGagG-GCAa -3' miRNA: 3'- -UGCGCUGGUGuGcCUCGGCggCaCGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 115202 | 0.68 | 0.684359 |
Target: 5'- cCGUGGCCGCcgcgACGGGGCauacCGCCGgGCu -3' miRNA: 3'- uGCGCUGGUG----UGCCUCG----GCGGCaCGu -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 118176 | 0.72 | 0.41743 |
Target: 5'- -gGCGGCCGuCACGGcuGCCGCCGUuCGg -3' miRNA: 3'- ugCGCUGGU-GUGCCu-CGGCGGCAcGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 120147 | 0.66 | 0.793626 |
Target: 5'- gACGCGGCC--GCGGcGaCGCCGgugGCAc -3' miRNA: 3'- -UGCGCUGGugUGCCuCgGCGGCa--CGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 122481 | 0.66 | 0.802075 |
Target: 5'- cCGCGACCACAccuCGGAGaacaCGuuG-GCc -3' miRNA: 3'- uGCGCUGGUGU---GCCUCg---GCggCaCGu -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 122486 | 0.66 | 0.802075 |
Target: 5'- aGCGCacGACCcgcaGCugGGcGGUCGCCGcGCGc -3' miRNA: 3'- -UGCG--CUGG----UGugCC-UCGGCGGCaCGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 123879 | 0.7 | 0.541176 |
Target: 5'- cACGCG-CCGCA-GGuG-CGCCGUGCAc -3' miRNA: 3'- -UGCGCuGGUGUgCCuCgGCGGCACGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 124255 | 0.7 | 0.5226 |
Target: 5'- -gGCGACa--GCGGgaAGCCGCCGUcGCAc -3' miRNA: 3'- ugCGCUGgugUGCC--UCGGCGGCA-CGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 125623 | 0.66 | 0.776352 |
Target: 5'- uGCGCG-CCugguagaaguGCAC-GAGCCGCCGcgugGCGu -3' miRNA: 3'- -UGCGCuGG----------UGUGcCUCGGCGGCa---CGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 126266 | 0.68 | 0.693854 |
Target: 5'- uGCGCGACgGuC-CGGAGgccCCGCCGcGCGa -3' miRNA: 3'- -UGCGCUGgU-GuGCCUC---GGCGGCaCGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 126722 | 0.66 | 0.802075 |
Target: 5'- -gGCGACCGCu--GAGCCuGCCGccGCGg -3' miRNA: 3'- ugCGCUGGUGugcCUCGG-CGGCa-CGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 127509 | 0.66 | 0.802075 |
Target: 5'- cGCGCGucguccucugccGCCugcuCAUGGGccccGUCGCCGUGCc -3' miRNA: 3'- -UGCGC------------UGGu---GUGCCU----CGGCGGCACGu -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 129614 | 0.67 | 0.722036 |
Target: 5'- uGCGCGGUCAgCGCGGAGaacuggacCCGCCG-GCu -3' miRNA: 3'- -UGCGCUGGU-GUGCCUC--------GGCGGCaCGu -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 130048 | 0.68 | 0.674826 |
Target: 5'- gACGaCGACC-CGCGGcccgAGCaCGCCGcgGCGg -3' miRNA: 3'- -UGC-GCUGGuGUGCC----UCG-GCGGCa-CGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 130172 | 0.66 | 0.788495 |
Target: 5'- cCGCGACC-C-CGGcGCCaucuggugcgacgggGCCGUGCu -3' miRNA: 3'- uGCGCUGGuGuGCCuCGG---------------CGGCACGu -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 131917 | 0.66 | 0.776352 |
Target: 5'- cCGCGACUACACGacGGGUUccuuggGCCuGUGCAu -3' miRNA: 3'- uGCGCUGGUGUGC--CUCGG------CGG-CACGU- -5' |
|||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 135062 | 0.66 | 0.758621 |
Target: 5'- uACGCGGCagcCGCGGAGCgGgCCccGCAg -3' miRNA: 3'- -UGCGCUGgu-GUGCCUCGgC-GGcaCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home