miRNA display CGI


Results 101 - 119 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 169378 0.7 0.531859
Target:  5'- gACGCGugCgugGCGCGGGGCaacacgGCCGUGg- -3'
miRNA:   3'- -UGCGCugG---UGUGCCUCGg-----CGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 169727 0.69 0.617227
Target:  5'- uCGCGACCugcACAuCGGGGUCGUCG-GCu -3'
miRNA:   3'- uGCGCUGG---UGU-GCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 170281 0.66 0.793626
Target:  5'- --uCGGCCACGCGGucggcaccaucGCCGCCGggucgGUAa -3'
miRNA:   3'- ugcGCUGGUGUGCCu----------CGGCGGCa----CGU- -5'
15709 5' -61.3 NC_004065.1 + 177483 0.71 0.513404
Target:  5'- gGCGgGGgCGCACGGcggGGCCGCCGgggGUc -3'
miRNA:   3'- -UGCgCUgGUGUGCC---UCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 179283 1.07 0.00206
Target:  5'- cACGCGACCACACGGAGCCGCCGUGCAu -3'
miRNA:   3'- -UGCGCUGGUGUGCCUCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 187306 0.66 0.78505
Target:  5'- cUGCGAUCACugGGGcggaggagcGCuCGCCGaccucUGCAg -3'
miRNA:   3'- uGCGCUGGUGugCCU---------CG-GCGGC-----ACGU- -5'
15709 5' -61.3 NC_004065.1 + 188510 0.66 0.776352
Target:  5'- cCGCGACuCugGCGGGaCCGcCCGcGCGc -3'
miRNA:   3'- uGCGCUG-GugUGCCUcGGC-GGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 191094 0.68 0.646071
Target:  5'- cCGUcuuGAUCACuCGG-GUCGCCGUGCGu -3'
miRNA:   3'- uGCG---CUGGUGuGCCuCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 194296 0.66 0.78505
Target:  5'- cCGCGAUCugGCGccGAGUCGCCa-GCGg -3'
miRNA:   3'- uGCGCUGGugUGC--CUCGGCGGcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 195115 0.66 0.78505
Target:  5'- cCGCGACCGCACcGGGCUGUCu---- -3'
miRNA:   3'- uGCGCUGGUGUGcCUCGGCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 197073 0.68 0.688162
Target:  5'- cCGCGAcgucgacgcccgcauCCGCGCgGGAGCCGaCCG-GCc -3'
miRNA:   3'- uGCGCU---------------GGUGUG-CCUCGGC-GGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 197763 0.68 0.693854
Target:  5'- -aGCGGgCACuCGGAGCCGuCCGaugaugGCGg -3'
miRNA:   3'- ugCGCUgGUGuGCCUCGGC-GGCa-----CGU- -5'
15709 5' -61.3 NC_004065.1 + 199501 0.69 0.598037
Target:  5'- uACGUcucuucCCACGCGGcGGCCGCCacGUGCGc -3'
miRNA:   3'- -UGCGcu----GGUGUGCC-UCGGCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 201022 0.67 0.738664
Target:  5'- cCGCGugCGCGCGGcgccucgccaccGCCGCCGg--- -3'
miRNA:   3'- uGCGCugGUGUGCCu-----------CGGCGGCacgu -5'
15709 5' -61.3 NC_004065.1 + 203083 0.66 0.793626
Target:  5'- cCGCGGCCGC-CGGAGCgGUCu---- -3'
miRNA:   3'- uGCGCUGGUGuGCCUCGgCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 205267 0.73 0.369896
Target:  5'- cGCGcCGGCCaACGgGGGGCCGCCcaacgaGUGCGc -3'
miRNA:   3'- -UGC-GCUGG-UGUgCCUCGGCGG------CACGU- -5'
15709 5' -61.3 NC_004065.1 + 207991 0.67 0.719242
Target:  5'- cCGCGGCCuGCcCGGGGCCguggccggguuaguGCCGgcgGCGa -3'
miRNA:   3'- uGCGCUGG-UGuGCCUCGG--------------CGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 209298 0.66 0.765764
Target:  5'- cCGUGAUCGCcgucgucgccguCGGuGCCGUCGUGUg -3'
miRNA:   3'- uGCGCUGGUGu-----------GCCuCGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 216013 0.66 0.758621
Target:  5'- gAUGUGACCACACacguGGucaAGCCgGUCGUGUu -3'
miRNA:   3'- -UGCGCUGGUGUG----CC---UCGG-CGGCACGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.