miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 167342 0.72 0.434083
Target:  5'- cCGCGACCaACGCGGcggcagacagGGUCGCCGcUGCc -3'
miRNA:   3'- uGCGCUGG-UGUGCC----------UCGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 166150 0.66 0.776352
Target:  5'- gGCGcCGGCgGCAgCGGcGCCgacGUCGUGCAc -3'
miRNA:   3'- -UGC-GCUGgUGU-GCCuCGG---CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 165886 0.68 0.646071
Target:  5'- gGCGaGGCCGCACGcgcuGCCGUCGUGg- -3'
miRNA:   3'- -UGCgCUGGUGUGCcu--CGGCGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 164776 0.69 0.597079
Target:  5'- gGCGUgcagggaGAUCAUGCGGAuguagGUCGCCGUGCu -3'
miRNA:   3'- -UGCG-------CUGGUGUGCCU-----CGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 164187 0.69 0.588472
Target:  5'- uCGuCGugCGCGCGGAucuCCGCCG-GCAu -3'
miRNA:   3'- uGC-GCugGUGUGCCUc--GGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 163420 0.73 0.385325
Target:  5'- aGCGuCGGCaacgcCGCGGuggccGCCGCCGUGCAg -3'
miRNA:   3'- -UGC-GCUGgu---GUGCCu----CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 163090 0.66 0.76754
Target:  5'- gGCGagGGCCGCACcgagaacugGGGGCCcggcugGCUGUGCGc -3'
miRNA:   3'- -UGCg-CUGGUGUG---------CCUCGG------CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 161368 0.68 0.684359
Target:  5'- uACGcCGACUGCGCGuacgccucGGCCGCCuGUGCc -3'
miRNA:   3'- -UGC-GCUGGUGUGCc-------UCGGCGG-CACGu -5'
15709 5' -61.3 NC_004065.1 + 152814 0.75 0.305831
Target:  5'- aGCGUGGCCAUcgccguGCGGGgcGCCGCCGcGCAc -3'
miRNA:   3'- -UGCGCUGGUG------UGCCU--CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 148133 0.68 0.684359
Target:  5'- cACGcCGACCucaGCACGc--CCGCCGUGCc -3'
miRNA:   3'- -UGC-GCUGG---UGUGCcucGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 147476 0.7 0.531859
Target:  5'- cUGCGGCCGCAUGGuGGCCGUCcaGCc -3'
miRNA:   3'- uGCGCUGGUGUGCC-UCGGCGGcaCGu -5'
15709 5' -61.3 NC_004065.1 + 146818 0.71 0.474674
Target:  5'- -gGCGGCgCGCACGGgggacucgagagcgGGCCGCCGggaGCGc -3'
miRNA:   3'- ugCGCUG-GUGUGCC--------------UCGGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 146599 0.71 0.477329
Target:  5'- -gGUGGCCAU-CGGGGCCGUCG-GCGg -3'
miRNA:   3'- ugCGCUGGUGuGCCUCGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 141601 0.71 0.513404
Target:  5'- aACGCGACgGCgGCGGGcuccGCUGCCG-GCGg -3'
miRNA:   3'- -UGCGCUGgUG-UGCCU----CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 139856 0.69 0.597079
Target:  5'- -gGCGACgGCggaggcgGCGGAGCCGgCG-GCAg -3'
miRNA:   3'- ugCGCUGgUG-------UGCCUCGGCgGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 138668 0.72 0.451114
Target:  5'- cCGcCGAgUACACGGGGCaCGUCGUGUg -3'
miRNA:   3'- uGC-GCUgGUGUGCCUCG-GCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 138401 0.71 0.513404
Target:  5'- cGCGCugcccaagGACCGgACGGAacaacaaCCGCCGUGCGu -3'
miRNA:   3'- -UGCG--------CUGGUgUGCCUc------GGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 137930 0.68 0.684359
Target:  5'- gACGCG-CCggGCuCGGAGCUGCUG-GCGc -3'
miRNA:   3'- -UGCGCuGG--UGuGCCUCGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 135599 0.72 0.41743
Target:  5'- cACGCG-CCGCugGGAGaCgGCCGUcacGCGg -3'
miRNA:   3'- -UGCGCuGGUGugCCUC-GgCGGCA---CGU- -5'
15709 5' -61.3 NC_004065.1 + 135062 0.66 0.758621
Target:  5'- uACGCGGCagcCGCGGAGCgGgCCccGCAg -3'
miRNA:   3'- -UGCGCUGgu-GUGCCUCGgC-GGcaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.