miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 131917 0.66 0.776352
Target:  5'- cCGCGACUACACGacGGGUUccuuggGCCuGUGCAu -3'
miRNA:   3'- uGCGCUGGUGUGC--CUCGG------CGG-CACGU- -5'
15709 5' -61.3 NC_004065.1 + 130172 0.66 0.788495
Target:  5'- cCGCGACC-C-CGGcGCCaucuggugcgacgggGCCGUGCu -3'
miRNA:   3'- uGCGCUGGuGuGCCuCGG---------------CGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 130048 0.68 0.674826
Target:  5'- gACGaCGACC-CGCGGcccgAGCaCGCCGcgGCGg -3'
miRNA:   3'- -UGC-GCUGGuGUGCC----UCG-GCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 129614 0.67 0.722036
Target:  5'- uGCGCGGUCAgCGCGGAGaacuggacCCGCCG-GCu -3'
miRNA:   3'- -UGCGCUGGU-GUGCCUC--------GGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 127509 0.66 0.802075
Target:  5'- cGCGCGucguccucugccGCCugcuCAUGGGccccGUCGCCGUGCc -3'
miRNA:   3'- -UGCGC------------UGGu---GUGCCU----CGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 126722 0.66 0.802075
Target:  5'- -gGCGACCGCu--GAGCCuGCCGccGCGg -3'
miRNA:   3'- ugCGCUGGUGugcCUCGG-CGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 126266 0.68 0.693854
Target:  5'- uGCGCGACgGuC-CGGAGgccCCGCCGcGCGa -3'
miRNA:   3'- -UGCGCUGgU-GuGCCUC---GGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 125623 0.66 0.776352
Target:  5'- uGCGCG-CCugguagaaguGCAC-GAGCCGCCGcgugGCGu -3'
miRNA:   3'- -UGCGCuGG----------UGUGcCUCGGCGGCa---CGU- -5'
15709 5' -61.3 NC_004065.1 + 124255 0.7 0.5226
Target:  5'- -gGCGACa--GCGGgaAGCCGCCGUcGCAc -3'
miRNA:   3'- ugCGCUGgugUGCC--UCGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 123879 0.7 0.541176
Target:  5'- cACGCG-CCGCA-GGuG-CGCCGUGCAc -3'
miRNA:   3'- -UGCGCuGGUGUgCCuCgGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 122486 0.66 0.802075
Target:  5'- aGCGCacGACCcgcaGCugGGcGGUCGCCGcGCGc -3'
miRNA:   3'- -UGCG--CUGG----UGugCC-UCGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 122481 0.66 0.802075
Target:  5'- cCGCGACCACAccuCGGAGaacaCGuuG-GCc -3'
miRNA:   3'- uGCGCUGGUGU---GCCUCg---GCggCaCGu -5'
15709 5' -61.3 NC_004065.1 + 120147 0.66 0.793626
Target:  5'- gACGCGGCC--GCGGcGaCGCCGgugGCAc -3'
miRNA:   3'- -UGCGCUGGugUGCCuCgGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 118176 0.72 0.41743
Target:  5'- -gGCGGCCGuCACGGcuGCCGCCGUuCGg -3'
miRNA:   3'- ugCGCUGGU-GUGCCu-CGGCGGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 115202 0.68 0.684359
Target:  5'- cCGUGGCCGCcgcgACGGGGCauacCGCCGgGCu -3'
miRNA:   3'- uGCGCUGGUG----UGCCUCG----GCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 115039 0.66 0.776352
Target:  5'- cGCGCGGCCGC-CaGGGCCGagG-GCAa -3'
miRNA:   3'- -UGCGCUGGUGuGcCUCGGCggCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 114867 0.66 0.758621
Target:  5'- -gGCGACg--ACGGuGCCGCCGgccgGCGg -3'
miRNA:   3'- ugCGCUGgugUGCCuCGGCGGCa---CGU- -5'
15709 5' -61.3 NC_004065.1 + 113703 0.7 0.569431
Target:  5'- aACGUGACCAUucccguaggaAUGGAGCUcgGCCGagUGCAc -3'
miRNA:   3'- -UGCGCUGGUG----------UGCCUCGG--CGGC--ACGU- -5'
15709 5' -61.3 NC_004065.1 + 113438 0.71 0.468506
Target:  5'- -aGCGGCgGC-CGGGGggcCCGCCGUGCc -3'
miRNA:   3'- ugCGCUGgUGuGCCUC---GGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 111915 0.7 0.5226
Target:  5'- cGCGCGGCgACgagagacgccAUGGGcGCCGCCGUcGCGg -3'
miRNA:   3'- -UGCGCUGgUG----------UGCCU-CGGCGGCA-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.