miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 165886 0.68 0.646071
Target:  5'- gGCGaGGCCGCACGcgcuGCCGUCGUGg- -3'
miRNA:   3'- -UGCgCUGGUGUGCcu--CGGCGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 25593 0.7 0.535579
Target:  5'- -gGCGGCUgaGCAgcaggccgaucucgaUGGGGCCuGCCGUGCAg -3'
miRNA:   3'- ugCGCUGG--UGU---------------GCCUCGG-CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 123879 0.7 0.541176
Target:  5'- cACGCG-CCGCA-GGuG-CGCCGUGCAc -3'
miRNA:   3'- -UGCGCuGGUGUgCCuCgGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 168628 0.7 0.559967
Target:  5'- gGCGCugguGCCGCggGCGGAGCCGgCGcgGCGa -3'
miRNA:   3'- -UGCGc---UGGUG--UGCCUCGGCgGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 62473 0.7 0.569431
Target:  5'- -gGCGACgGCA-GGAGCgGCCGcgGCGg -3'
miRNA:   3'- ugCGCUGgUGUgCCUCGgCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 199501 0.69 0.598037
Target:  5'- uACGUcucuucCCACGCGGcGGCCGCCacGUGCGc -3'
miRNA:   3'- -UGCGcu----GGUGUGCC-UCGGCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 64641 0.69 0.617227
Target:  5'- gGCcauCGACCGCGCGu--CCGCCGUGCu -3'
miRNA:   3'- -UGc--GCUGGUGUGCcucGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 90378 0.69 0.617227
Target:  5'- cACGCG-CCGCACagcuuGGAGCCGgCGUuCAc -3'
miRNA:   3'- -UGCGCuGGUGUG-----CCUCGGCgGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 47728 0.69 0.636457
Target:  5'- aGCGUGGCCuugauCACGGGGUCagaggccaugGCCGgGCAg -3'
miRNA:   3'- -UGCGCUGGu----GUGCCUCGG----------CGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 147476 0.7 0.531859
Target:  5'- cUGCGGCCGCAUGGuGGCCGUCcaGCc -3'
miRNA:   3'- uGCGCUGGUGUGCC-UCGGCGGcaCGu -5'
15709 5' -61.3 NC_004065.1 + 109890 0.7 0.5226
Target:  5'- cCGCGGCCGCGucgggggguccCGGcucguccgccgcGGCCGCCGUcGCGu -3'
miRNA:   3'- uGCGCUGGUGU-----------GCC------------UCGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 124255 0.7 0.5226
Target:  5'- -gGCGACa--GCGGgaAGCCGCCGUcGCAc -3'
miRNA:   3'- ugCGCUGgugUGCC--UCGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 163420 0.73 0.385325
Target:  5'- aGCGuCGGCaacgcCGCGGuggccGCCGCCGUGCAg -3'
miRNA:   3'- -UGC-GCUGgu---GUGCCu----CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 36106 0.73 0.401173
Target:  5'- cCGUGGCgGCaACGGGGCCGCUGccgGCGg -3'
miRNA:   3'- uGCGCUGgUG-UGCCUCGGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 103646 0.73 0.409252
Target:  5'- uGCGCGAgCAgGCGG--UCGCCGUGCGc -3'
miRNA:   3'- -UGCGCUgGUgUGCCucGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 118176 0.72 0.41743
Target:  5'- -gGCGGCCGuCACGGcuGCCGCCGUuCGg -3'
miRNA:   3'- ugCGCUGGU-GUGCCu-CGGCGGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 135599 0.72 0.41743
Target:  5'- cACGCG-CCGCugGGAGaCgGCCGUcacGCGg -3'
miRNA:   3'- -UGCGCuGGUGugCCUC-GgCGGCA---CGU- -5'
15709 5' -61.3 NC_004065.1 + 113438 0.71 0.468506
Target:  5'- -aGCGGCgGC-CGGGGggcCCGCCGUGCc -3'
miRNA:   3'- ugCGCUGgUGuGCCUC---GGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 45544 0.71 0.474674
Target:  5'- cCGCGGCgGCgGCGGcAGCCGCCcagaaacauucugaGUGCAu -3'
miRNA:   3'- uGCGCUGgUG-UGCC-UCGGCGG--------------CACGU- -5'
15709 5' -61.3 NC_004065.1 + 138401 0.71 0.513404
Target:  5'- cGCGCugcccaagGACCGgACGGAacaacaaCCGCCGUGCGu -3'
miRNA:   3'- -UGCG--------CUGGUgUGCCUc------GGCGGCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.