miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 115202 0.68 0.684359
Target:  5'- cCGUGGCCGCcgcgACGGGGCauacCGCCGgGCu -3'
miRNA:   3'- uGCGCUGGUG----UGCCUCG----GCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 88412 0.68 0.655675
Target:  5'- cCGCcACCGCcggcaGCGGAgcccGCCGCCGUcGCGu -3'
miRNA:   3'- uGCGcUGGUG-----UGCCU----CGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 65624 0.68 0.655675
Target:  5'- cACGCuggaccaggagGACCugACGGAcccGCUGCCGcUGCc -3'
miRNA:   3'- -UGCG-----------CUGGugUGCCU---CGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 165886 0.68 0.646071
Target:  5'- gGCGaGGCCGCACGcgcuGCCGUCGUGg- -3'
miRNA:   3'- -UGCgCUGGUGUGCcu--CGGCGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 47728 0.69 0.636457
Target:  5'- aGCGUGGCCuugauCACGGGGUCagaggccaugGCCGgGCAg -3'
miRNA:   3'- -UGCGCUGGu----GUGCCUCGG----------CGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 90378 0.69 0.617227
Target:  5'- cACGCG-CCGCACagcuuGGAGCCGgCGUuCAc -3'
miRNA:   3'- -UGCGCuGGUGUG-----CCUCGGCgGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 64641 0.69 0.617227
Target:  5'- gGCcauCGACCGCGCGu--CCGCCGUGCu -3'
miRNA:   3'- -UGc--GCUGGUGUGCcucGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 199501 0.69 0.598037
Target:  5'- uACGUcucuucCCACGCGGcGGCCGCCacGUGCGc -3'
miRNA:   3'- -UGCGcu----GGUGUGCC-UCGGCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 62473 0.7 0.569431
Target:  5'- -gGCGACgGCA-GGAGCgGCCGcgGCGg -3'
miRNA:   3'- ugCGCUGgUGUgCCUCGgCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 168628 0.7 0.559967
Target:  5'- gGCGCugguGCCGCggGCGGAGCCGgCGcgGCGa -3'
miRNA:   3'- -UGCGc---UGGUG--UGCCUCGGCgGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 123879 0.7 0.541176
Target:  5'- cACGCG-CCGCA-GGuG-CGCCGUGCAc -3'
miRNA:   3'- -UGCGCuGGUGUgCCuCgGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 41272 0.72 0.425708
Target:  5'- uCGCGAUCGCccuggUGGGcuucGCCGCCGUGCGc -3'
miRNA:   3'- uGCGCUGGUGu----GCCU----CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 35560 0.73 0.377558
Target:  5'- gGCGUGAgCG-GCGGcGCCGCCGUGCc -3'
miRNA:   3'- -UGCGCUgGUgUGCCuCGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 205267 0.73 0.369896
Target:  5'- cGCGcCGGCCaACGgGGGGCCGCCcaacgaGUGCGc -3'
miRNA:   3'- -UGC-GCUGG-UGUgCCUCGGCGG------CACGU- -5'
15709 5' -61.3 NC_004065.1 + 104537 0.75 0.322047
Target:  5'- cUGCuuCCACACGGAgaacgggcaggugcgGCCGCUGUGCAc -3'
miRNA:   3'- uGCGcuGGUGUGCCU---------------CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 22486 0.75 0.312511
Target:  5'- gGCGCGACgACGCGGAGCgCGCg--GCGa -3'
miRNA:   3'- -UGCGCUGgUGUGCCUCG-GCGgcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 152814 0.75 0.305831
Target:  5'- aGCGUGGCCAUcgccguGCGGGgcGCCGCCGcGCAc -3'
miRNA:   3'- -UGCGCUGGUG------UGCCU--CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 105190 0.75 0.305831
Target:  5'- cGCGaugGACCAgGCGGAGCCGCUGUuCGu -3'
miRNA:   3'- -UGCg--CUGGUgUGCCUCGGCGGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 93533 0.78 0.185666
Target:  5'- gACGCugggguccaGACCGC-CGGAGCCGCCGaUGCu -3'
miRNA:   3'- -UGCG---------CUGGUGuGCCUCGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 126722 0.66 0.802075
Target:  5'- -gGCGACCGCu--GAGCCuGCCGccGCGg -3'
miRNA:   3'- ugCGCUGGUGugcCUCGG-CGGCa-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.