miRNA display CGI


Results 61 - 80 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 164776 0.69 0.597079
Target:  5'- gGCGUgcagggaGAUCAUGCGGAuguagGUCGCCGUGCu -3'
miRNA:   3'- -UGCG-------CUGGUGUGCCU-----CGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 104903 0.69 0.598037
Target:  5'- -gGCGACgGCGCGGuGgUGCCGgcgGCGu -3'
miRNA:   3'- ugCGCUGgUGUGCCuCgGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 169727 0.69 0.617227
Target:  5'- uCGCGACCugcACAuCGGGGUCGUCG-GCu -3'
miRNA:   3'- uGCGCUGG---UGU-GCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 87538 0.69 0.62684
Target:  5'- aGCGCGuGCCAgACGGgguuAGCCGCC-UGUc -3'
miRNA:   3'- -UGCGC-UGGUgUGCC----UCGGCGGcACGu -5'
15709 5' -61.3 NC_004065.1 + 191094 0.68 0.646071
Target:  5'- cCGUcuuGAUCACuCGG-GUCGCCGUGCGu -3'
miRNA:   3'- uGCG---CUGGUGuGCCuCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 177483 0.71 0.513404
Target:  5'- gGCGgGGgCGCACGGcggGGCCGCCGgggGUc -3'
miRNA:   3'- -UGCgCUgGUGUGCC---UCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 29272 0.71 0.504276
Target:  5'- -aGCGACCgACGCGuGAGCCGCCu---- -3'
miRNA:   3'- ugCGCUGG-UGUGC-CUCGGCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 93533 0.78 0.185666
Target:  5'- gACGCugggguccaGACCGC-CGGAGCCGCCGaUGCu -3'
miRNA:   3'- -UGCG---------CUGGUGuGCCUCGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 105190 0.75 0.305831
Target:  5'- cGCGaugGACCAgGCGGAGCCGCUGUuCGu -3'
miRNA:   3'- -UGCg--CUGGUgUGCCUCGGCGGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 152814 0.75 0.305831
Target:  5'- aGCGUGGCCAUcgccguGCGGGgcGCCGCCGcGCAc -3'
miRNA:   3'- -UGCGCUGGUG------UGCCU--CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 22486 0.75 0.312511
Target:  5'- gGCGCGACgACGCGGAGCgCGCg--GCGa -3'
miRNA:   3'- -UGCGCUGgUGUGCCUCG-GCGgcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 104537 0.75 0.322047
Target:  5'- cUGCuuCCACACGGAgaacgggcaggugcgGCCGCUGUGCAc -3'
miRNA:   3'- uGCGcuGGUGUGCCU---------------CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 205267 0.73 0.369896
Target:  5'- cGCGcCGGCCaACGgGGGGCCGCCcaacgaGUGCGc -3'
miRNA:   3'- -UGC-GCUGG-UGUgCCUCGGCGG------CACGU- -5'
15709 5' -61.3 NC_004065.1 + 35560 0.73 0.377558
Target:  5'- gGCGUGAgCG-GCGGcGCCGCCGUGCc -3'
miRNA:   3'- -UGCGCUgGUgUGCCuCGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 41272 0.72 0.425708
Target:  5'- uCGCGAUCGCccuggUGGGcuucGCCGCCGUGCGc -3'
miRNA:   3'- uGCGCUGGUGu----GCCU----CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 167342 0.72 0.434083
Target:  5'- cCGCGACCaACGCGGcggcagacagGGUCGCCGcUGCc -3'
miRNA:   3'- uGCGCUGG-UGUGCC----------UCGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 29046 0.72 0.440002
Target:  5'- uCGCGACCcguCACcacgcaccgauccuGGAGCCGCCGcGCu -3'
miRNA:   3'- uGCGCUGGu--GUG--------------CCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 138668 0.72 0.451114
Target:  5'- cCGcCGAgUACACGGGGCaCGUCGUGUg -3'
miRNA:   3'- uGC-GCUgGUGUGCCUCG-GCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 146818 0.71 0.474674
Target:  5'- -gGCGGCgCGCACGGgggacucgagagcgGGCCGCCGggaGCGc -3'
miRNA:   3'- ugCGCUG-GUGUGCC--------------UCGGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 146599 0.71 0.477329
Target:  5'- -gGUGGCCAU-CGGGGCCGUCG-GCGg -3'
miRNA:   3'- ugCGCUGGUGuGCCUCGGCGGCaCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.