miRNA display CGI


Results 101 - 119 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 93533 0.78 0.185666
Target:  5'- gACGCugggguccaGACCGC-CGGAGCCGCCGaUGCu -3'
miRNA:   3'- -UGCG---------CUGGUGuGCCUCGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 141601 0.71 0.513404
Target:  5'- aACGCGACgGCgGCGGGcuccGCUGCCG-GCGg -3'
miRNA:   3'- -UGCGCUGgUG-UGCCU----CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 111915 0.7 0.5226
Target:  5'- cGCGCGGCgACgagagacgccAUGGGcGCCGCCGUcGCGg -3'
miRNA:   3'- -UGCGCUGgUG----------UGCCU-CGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 38455 0.68 0.683408
Target:  5'- cGCGCGccgaucACCGCACGcgugcggaagaguGAGCCGCCcuUGCu -3'
miRNA:   3'- -UGCGC------UGGUGUGC-------------CUCGGCGGc-ACGu -5'
15709 5' -61.3 NC_004065.1 + 105562 0.68 0.674826
Target:  5'- gGCGCaGCgGCACGGcgcGCCGUCG-GCGg -3'
miRNA:   3'- -UGCGcUGgUGUGCCu--CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 130048 0.68 0.674826
Target:  5'- gACGaCGACC-CGCGGcccgAGCaCGCCGcgGCGg -3'
miRNA:   3'- -UGC-GCUGGuGUGCC----UCG-GCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 191094 0.68 0.646071
Target:  5'- cCGUcuuGAUCACuCGG-GUCGCCGUGCGu -3'
miRNA:   3'- uGCG---CUGGUGuGCCuCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 87538 0.69 0.62684
Target:  5'- aGCGCGuGCCAgACGGgguuAGCCGCC-UGUc -3'
miRNA:   3'- -UGCGC-UGGUgUGCC----UCGGCGGcACGu -5'
15709 5' -61.3 NC_004065.1 + 169727 0.69 0.617227
Target:  5'- uCGCGACCugcACAuCGGGGUCGUCG-GCu -3'
miRNA:   3'- uGCGCUGG---UGU-GCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 104903 0.69 0.598037
Target:  5'- -gGCGACgGCGCGGuGgUGCCGgcgGCGu -3'
miRNA:   3'- ugCGCUGgUGUGCCuCgGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 164776 0.69 0.597079
Target:  5'- gGCGUgcagggaGAUCAUGCGGAuguagGUCGCCGUGCu -3'
miRNA:   3'- -UGCG-------CUGGUGUGCCU-----CGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 139856 0.69 0.597079
Target:  5'- -gGCGACgGCggaggcgGCGGAGCCGgCG-GCAg -3'
miRNA:   3'- ugCGCUGgUG-------UGCCUCGGCgGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 106350 0.69 0.588472
Target:  5'- gGCGCuGCUGCACGGgcAGCgCGCCacGUGCGa -3'
miRNA:   3'- -UGCGcUGGUGUGCC--UCG-GCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 164187 0.69 0.588472
Target:  5'- uCGuCGugCGCGCGGAucuCCGCCG-GCAu -3'
miRNA:   3'- uGC-GCugGUGUGCCUc--GGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 113703 0.7 0.569431
Target:  5'- aACGUGACCAUucccguaggaAUGGAGCUcgGCCGagUGCAc -3'
miRNA:   3'- -UGCGCUGGUG----------UGCCUCGG--CGGC--ACGU- -5'
15709 5' -61.3 NC_004065.1 + 6488 0.7 0.550547
Target:  5'- uCGCGaACCGCACGGucgggucGCgGCCG-GCAc -3'
miRNA:   3'- uGCGC-UGGUGUGCCu------CGgCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 4374 0.7 0.541176
Target:  5'- aGCGCGACgGCggcgGCgGGAGCCGgaGUGCu -3'
miRNA:   3'- -UGCGCUGgUG----UG-CCUCGGCggCACGu -5'
15709 5' -61.3 NC_004065.1 + 169378 0.7 0.531859
Target:  5'- gACGCGugCgugGCGCGGGGCaacacgGCCGUGg- -3'
miRNA:   3'- -UGCGCugG---UGUGCCUCGg-----CGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 179283 1.07 0.00206
Target:  5'- cACGCGACCACACGGAGCCGCCGUGCAu -3'
miRNA:   3'- -UGCGCUGGUGUGCCUCGGCGGCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.