miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 164187 0.69 0.588472
Target:  5'- uCGuCGugCGCGCGGAucuCCGCCG-GCAu -3'
miRNA:   3'- uGC-GCugGUGUGCCUc--GGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 4374 0.7 0.541176
Target:  5'- aGCGCGACgGCggcgGCgGGAGCCGgaGUGCu -3'
miRNA:   3'- -UGCGCUGgUG----UG-CCUCGGCggCACGu -5'
15709 5' -61.3 NC_004065.1 + 29046 0.72 0.440002
Target:  5'- uCGCGACCcguCACcacgcaccgauccuGGAGCCGCCGcGCu -3'
miRNA:   3'- uGCGCUGGu--GUG--------------CCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 152814 0.75 0.305831
Target:  5'- aGCGUGGCCAUcgccguGCGGGgcGCCGCCGcGCAc -3'
miRNA:   3'- -UGCGCUGGUG------UGCCU--CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 137930 0.68 0.684359
Target:  5'- gACGCG-CCggGCuCGGAGCUGCUG-GCGc -3'
miRNA:   3'- -UGCGCuGG--UGuGCCUCGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 169727 0.69 0.617227
Target:  5'- uCGCGACCugcACAuCGGGGUCGUCG-GCu -3'
miRNA:   3'- uGCGCUGG---UGU-GCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 111915 0.7 0.5226
Target:  5'- cGCGCGGCgACgagagacgccAUGGGcGCCGCCGUcGCGg -3'
miRNA:   3'- -UGCGCUGgUG----------UGCCU-CGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 105190 0.75 0.305831
Target:  5'- cGCGaugGACCAgGCGGAGCCGCUGUuCGu -3'
miRNA:   3'- -UGCg--CUGGUgUGCCUCGGCGGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 104903 0.69 0.598037
Target:  5'- -gGCGACgGCGCGGuGgUGCCGgcgGCGu -3'
miRNA:   3'- ugCGCUGgUGUGCCuCgGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 93533 0.78 0.185666
Target:  5'- gACGCugggguccaGACCGC-CGGAGCCGCCGaUGCu -3'
miRNA:   3'- -UGCG---------CUGGUGuGCCUCGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 169378 0.7 0.531859
Target:  5'- gACGCGugCgugGCGCGGGGCaacacgGCCGUGg- -3'
miRNA:   3'- -UGCGCugG---UGUGCCUCGg-----CGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 106350 0.69 0.588472
Target:  5'- gGCGCuGCUGCACGGgcAGCgCGCCacGUGCGa -3'
miRNA:   3'- -UGCGcUGGUGUGCC--UCG-GCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 29272 0.71 0.504276
Target:  5'- -aGCGACCgACGCGuGAGCCGCCu---- -3'
miRNA:   3'- ugCGCUGG-UGUGC-CUCGGCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 138668 0.72 0.451114
Target:  5'- cCGcCGAgUACACGGGGCaCGUCGUGUg -3'
miRNA:   3'- uGC-GCUgGUGUGCCUCG-GCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 35560 0.73 0.377558
Target:  5'- gGCGUGAgCG-GCGGcGCCGCCGUGCc -3'
miRNA:   3'- -UGCGCUgGUgUGCCuCGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 22486 0.75 0.312511
Target:  5'- gGCGCGACgACGCGGAGCgCGCg--GCGa -3'
miRNA:   3'- -UGCGCUGgUGUGCCUCG-GCGgcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 197763 0.68 0.693854
Target:  5'- -aGCGGgCACuCGGAGCCGuCCGaugaugGCGg -3'
miRNA:   3'- ugCGCUgGUGuGCCUCGGC-GGCa-----CGU- -5'
15709 5' -61.3 NC_004065.1 + 148133 0.68 0.684359
Target:  5'- cACGcCGACCucaGCACGc--CCGCCGUGCc -3'
miRNA:   3'- -UGC-GCUGG---UGUGCcucGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 105562 0.68 0.674826
Target:  5'- gGCGCaGCgGCACGGcgcGCCGUCG-GCGg -3'
miRNA:   3'- -UGCGcUGgUGUGCCu--CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 87538 0.69 0.62684
Target:  5'- aGCGCGuGCCAgACGGgguuAGCCGCC-UGUc -3'
miRNA:   3'- -UGCGC-UGGUgUGCC----UCGGCGGcACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.