miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 129614 0.67 0.722036
Target:  5'- uGCGCGGUCAgCGCGGAGaacuggacCCGCCG-GCu -3'
miRNA:   3'- -UGCGCUGGU-GUGCCUC--------GGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 169727 0.69 0.617227
Target:  5'- uCGCGACCugcACAuCGGGGUCGUCG-GCu -3'
miRNA:   3'- uGCGCUGG---UGU-GCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 146818 0.71 0.474674
Target:  5'- -gGCGGCgCGCACGGgggacucgagagcgGGCCGCCGggaGCGc -3'
miRNA:   3'- ugCGCUG-GUGUGCC--------------UCGGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 30074 0.67 0.722036
Target:  5'- gACGgGACCGCcgugGCGGAGCgcgCGCUGaUGUg -3'
miRNA:   3'- -UGCgCUGGUG----UGCCUCG---GCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 138668 0.72 0.451114
Target:  5'- cCGcCGAgUACACGGGGCaCGUCGUGUg -3'
miRNA:   3'- uGC-GCUgGUGUGCCUCG-GCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 37926 0.66 0.791921
Target:  5'- cCGCGAuccucguguugguCCACAucucguucUGGAucucgucGCCGCCGUGUAa -3'
miRNA:   3'- uGCGCU-------------GGUGU--------GCCU-------CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 29272 0.71 0.504276
Target:  5'- -aGCGACCgACGCGuGAGCCGCCu---- -3'
miRNA:   3'- ugCGCUGG-UGUGC-CUCGGCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 96035 0.66 0.78505
Target:  5'- cCGCGugCguggGCACGGgccccGGCCGCCGauauagGCu -3'
miRNA:   3'- uGCGCugG----UGUGCC-----UCGGCGGCa-----CGu -5'
15709 5' -61.3 NC_004065.1 + 65461 0.66 0.78505
Target:  5'- aGCGCGAagCGguCGGcGCCGCCGccgGCu -3'
miRNA:   3'- -UGCGCUg-GUguGCCuCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 188510 0.66 0.776352
Target:  5'- cCGCGACuCugGCGGGaCCGcCCGcGCGc -3'
miRNA:   3'- uGCGCUG-GugUGCCUcGGC-GGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 131917 0.66 0.776352
Target:  5'- cCGCGACUACACGacGGGUUccuuggGCCuGUGCAu -3'
miRNA:   3'- uGCGCUGGUGUGC--CUCGG------CGG-CACGU- -5'
15709 5' -61.3 NC_004065.1 + 79621 0.66 0.758621
Target:  5'- cCGCuGCgCGCGCGGAcGCUGCgggCGUGCGu -3'
miRNA:   3'- uGCGcUG-GUGUGCCU-CGGCG---GCACGU- -5'
15709 5' -61.3 NC_004065.1 + 31531 0.67 0.731304
Target:  5'- cGCGgGGCUaccccgGCAUGGAGCUGCUGgugGUg -3'
miRNA:   3'- -UGCgCUGG------UGUGCCUCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 99937 0.68 0.693854
Target:  5'- gACGCcgGACCGCcgcgGCGGcGGCUGCUGcUGCGa -3'
miRNA:   3'- -UGCG--CUGGUG----UGCC-UCGGCGGC-ACGU- -5'
15709 5' -61.3 NC_004065.1 + 71173 0.68 0.684359
Target:  5'- aACGUGACCGCGuCGGucAGCaGCC-UGCAc -3'
miRNA:   3'- -UGCGCUGGUGU-GCC--UCGgCGGcACGU- -5'
15709 5' -61.3 NC_004065.1 + 38455 0.68 0.683408
Target:  5'- cGCGCGccgaucACCGCACGcgugcggaagaguGAGCCGCCcuUGCu -3'
miRNA:   3'- -UGCGC------UGGUGUGC-------------CUCGGCGGc-ACGu -5'
15709 5' -61.3 NC_004065.1 + 191094 0.68 0.646071
Target:  5'- cCGUcuuGAUCACuCGG-GUCGCCGUGCGu -3'
miRNA:   3'- uGCG---CUGGUGuGCCuCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 139856 0.69 0.597079
Target:  5'- -gGCGACgGCggaggcgGCGGAGCCGgCG-GCAg -3'
miRNA:   3'- ugCGCUGgUG-------UGCCUCGGCgGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 113703 0.7 0.569431
Target:  5'- aACGUGACCAUucccguaggaAUGGAGCUcgGCCGagUGCAc -3'
miRNA:   3'- -UGCGCUGGUG----------UGCCUCGG--CGGC--ACGU- -5'
15709 5' -61.3 NC_004065.1 + 111915 0.7 0.5226
Target:  5'- cGCGCGGCgACgagagacgccAUGGGcGCCGCCGUcGCGg -3'
miRNA:   3'- -UGCGCUGgUG----------UGCCU-CGGCGGCA-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.