miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 197763 0.68 0.693854
Target:  5'- -aGCGGgCACuCGGAGCCGuCCGaugaugGCGg -3'
miRNA:   3'- ugCGCUgGUGuGCCUCGGC-GGCa-----CGU- -5'
15709 5' -61.3 NC_004065.1 + 99937 0.68 0.693854
Target:  5'- gACGCcgGACCGCcgcgGCGGcGGCUGCUGcUGCGa -3'
miRNA:   3'- -UGCG--CUGGUG----UGCC-UCGGCGGC-ACGU- -5'
15709 5' -61.3 NC_004065.1 + 30074 0.67 0.722036
Target:  5'- gACGgGACCGCcgugGCGGAGCgcgCGCUGaUGUg -3'
miRNA:   3'- -UGCgCUGGUG----UGCCUCG---GCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 129614 0.67 0.722036
Target:  5'- uGCGCGGUCAgCGCGGAGaacuggacCCGCCG-GCu -3'
miRNA:   3'- -UGCGCUGGU-GUGCCUC--------GGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 31531 0.67 0.731304
Target:  5'- cGCGgGGCUaccccgGCAUGGAGCUGCUGgugGUg -3'
miRNA:   3'- -UGCgCUGG------UGUGCCUCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 8738 0.67 0.740495
Target:  5'- aACGUGACgAC-CGGAgGCCGUgGUGgCGg -3'
miRNA:   3'- -UGCGCUGgUGuGCCU-CGGCGgCAC-GU- -5'
15709 5' -61.3 NC_004065.1 + 95151 0.66 0.76754
Target:  5'- -aGCGACaguucuCGuCGccGCCGCCGUGCAg -3'
miRNA:   3'- ugCGCUGgu----GU-GCcuCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 209298 0.66 0.765764
Target:  5'- cCGUGAUCGCcgucgucgccguCGGuGCCGUCGUGUg -3'
miRNA:   3'- uGCGCUGGUGu-----------GCCuCGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 25593 0.7 0.535579
Target:  5'- -gGCGGCUgaGCAgcaggccgaucucgaUGGGGCCuGCCGUGCAg -3'
miRNA:   3'- ugCGCUGG--UGU---------------GCCUCGG-CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 201022 0.67 0.738664
Target:  5'- cCGCGugCGCGCGGcgccucgccaccGCCGCCGg--- -3'
miRNA:   3'- uGCGCugGUGUGCCu-----------CGGCGGCacgu -5'
15709 5' -61.3 NC_004065.1 + 68166 0.67 0.73958
Target:  5'- uCGCGGCgGCgcgcgcgACGGAGCUGUCG-GCc -3'
miRNA:   3'- uGCGCUGgUG-------UGCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 58619 0.67 0.740495
Target:  5'- gACGCG--CGCgGCGGAGUCGCCGgucucGCGg -3'
miRNA:   3'- -UGCGCugGUG-UGCCUCGGCGGCa----CGU- -5'
15709 5' -61.3 NC_004065.1 + 99850 0.67 0.703304
Target:  5'- -aGCGuCUGCGCcccGAucGCCGCCGUGCGa -3'
miRNA:   3'- ugCGCuGGUGUGc--CU--CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 113438 0.71 0.468506
Target:  5'- -aGCGGCgGC-CGGGGggcCCGCCGUGCc -3'
miRNA:   3'- ugCGCUGgUGuGCCUC---GGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 67589 0.67 0.740495
Target:  5'- gACGCuGAucUCGCcguCGGAGCUGCUgGUGCAg -3'
miRNA:   3'- -UGCG-CU--GGUGu--GCCUCGGCGG-CACGU- -5'
15709 5' -61.3 NC_004065.1 + 127509 0.66 0.802075
Target:  5'- cGCGCGucguccucugccGCCugcuCAUGGGccccGUCGCCGUGCc -3'
miRNA:   3'- -UGCGC------------UGGu---GUGCCU----CGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 99544 0.66 0.802075
Target:  5'- gGCGCucccgucucGCCGCgGCGGAcgGCCGUgGUGCGu -3'
miRNA:   3'- -UGCGc--------UGGUG-UGCCU--CGGCGgCACGU- -5'
15709 5' -61.3 NC_004065.1 + 168628 0.7 0.559967
Target:  5'- gGCGCugguGCCGCggGCGGAGCCGgCGcgGCGa -3'
miRNA:   3'- -UGCGc---UGGUG--UGCCUCGGCgGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 123879 0.7 0.541176
Target:  5'- cACGCG-CCGCA-GGuG-CGCCGUGCAc -3'
miRNA:   3'- -UGCGCuGGUGUgCCuCgGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 77742 0.67 0.749604
Target:  5'- uGCGCaacGCCACgaccACGGuguGCCuGCUGUGCGa -3'
miRNA:   3'- -UGCGc--UGGUG----UGCCu--CGG-CGGCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.