miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 65624 0.68 0.655675
Target:  5'- cACGCuggaccaggagGACCugACGGAcccGCUGCCGcUGCc -3'
miRNA:   3'- -UGCG-----------CUGGugUGCCU---CGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 55905 0.66 0.78505
Target:  5'- cCGC-ACCucuCACGGAGUccgCGCCG-GCAg -3'
miRNA:   3'- uGCGcUGGu--GUGCCUCG---GCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 68330 0.66 0.78505
Target:  5'- uCGUGGCUGCG-GGAGCUGCUGcaGCAg -3'
miRNA:   3'- uGCGCUGGUGUgCCUCGGCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 109595 0.66 0.78505
Target:  5'- gGCGUaucaGGCCGCGCucgacccccGGGCCGCgGUGCc -3'
miRNA:   3'- -UGCG----CUGGUGUGc--------CUCGGCGgCACGu -5'
15709 5' -61.3 NC_004065.1 + 194296 0.66 0.78505
Target:  5'- cCGCGAUCugGCGccGAGUCGCCa-GCGg -3'
miRNA:   3'- uGCGCUGGugUGC--CUCGGCGGcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 130172 0.66 0.788495
Target:  5'- cCGCGACC-C-CGGcGCCaucuggugcgacgggGCCGUGCu -3'
miRNA:   3'- uGCGCUGGuGuGCCuCGG---------------CGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 35945 0.66 0.793626
Target:  5'- uCGCGGCCGCAggucguCGGAcucgcGCCGCUGcuccUGCc -3'
miRNA:   3'- uGCGCUGGUGU------GCCU-----CGGCGGC----ACGu -5'
15709 5' -61.3 NC_004065.1 + 170281 0.66 0.793626
Target:  5'- --uCGGCCACGCGGucggcaccaucGCCGCCGggucgGUAa -3'
miRNA:   3'- ugcGCUGGUGUGCCu----------CGGCGGCa----CGU- -5'
15709 5' -61.3 NC_004065.1 + 21991 0.66 0.793626
Target:  5'- cCGCcacGGCCACgccgACGGucaucGCCGCCG-GCAc -3'
miRNA:   3'- uGCG---CUGGUG----UGCCu----CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 110295 0.66 0.776352
Target:  5'- cGCGCGACCcggccguCACGGucucgcagcucuGGCCGgggcUCGUGCu -3'
miRNA:   3'- -UGCGCUGGu------GUGCC------------UCGGC----GGCACGu -5'
15709 5' -61.3 NC_004065.1 + 99544 0.66 0.802075
Target:  5'- gGCGCucccgucucGCCGCgGCGGAcgGCCGUgGUGCGu -3'
miRNA:   3'- -UGCGc--------UGGUG-UGCCU--CGGCGgCACGU- -5'
15709 5' -61.3 NC_004065.1 + 127509 0.66 0.802075
Target:  5'- cGCGCGucguccucugccGCCugcuCAUGGGccccGUCGCCGUGCc -3'
miRNA:   3'- -UGCGC------------UGGu---GUGCCU----CGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 88412 0.68 0.655675
Target:  5'- cCGCcACCGCcggcaGCGGAgcccGCCGCCGUcGCGu -3'
miRNA:   3'- uGCGcUGGUG-----UGCCU----CGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 115202 0.68 0.684359
Target:  5'- cCGUGGCCGCcgcgACGGGGCauacCGCCGgGCu -3'
miRNA:   3'- uGCGCUGGUG----UGCCUCG----GCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 99850 0.67 0.703304
Target:  5'- -aGCGuCUGCGCcccGAucGCCGCCGUGCGa -3'
miRNA:   3'- ugCGCuGGUGUGc--CU--CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 201022 0.67 0.738664
Target:  5'- cCGCGugCGCGCGGcgccucgccaccGCCGCCGg--- -3'
miRNA:   3'- uGCGCugGUGUGCCu-----------CGGCGGCacgu -5'
15709 5' -61.3 NC_004065.1 + 68166 0.67 0.73958
Target:  5'- uCGCGGCgGCgcgcgcgACGGAGCUGUCG-GCc -3'
miRNA:   3'- uGCGCUGgUG-------UGCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 58619 0.67 0.740495
Target:  5'- gACGCG--CGCgGCGGAGUCGCCGgucucGCGg -3'
miRNA:   3'- -UGCGCugGUG-UGCCUCGGCGGCa----CGU- -5'
15709 5' -61.3 NC_004065.1 + 67589 0.67 0.740495
Target:  5'- gACGCuGAucUCGCcguCGGAGCUGCUgGUGCAg -3'
miRNA:   3'- -UGCG-CU--GGUGu--GCCUCGGCGG-CACGU- -5'
15709 5' -61.3 NC_004065.1 + 77742 0.67 0.749604
Target:  5'- uGCGCaacGCCACgaccACGGuguGCCuGCUGUGCGa -3'
miRNA:   3'- -UGCGc--UGGUG----UGCCu--CGG-CGGCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.