miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1571 3' -55.7 NC_001347.2 + 196183 0.66 0.965454
Target:  5'- aAGUaccGGACGCACcGCGCCGcCGUUu -3'
miRNA:   3'- -UCGgacCCUGUGUGuUGUGGCaGCAG- -5'
1571 3' -55.7 NC_001347.2 + 97969 0.66 0.962191
Target:  5'- cGCgUGcucGCGCACcgUACCGUCGUCc -3'
miRNA:   3'- uCGgACcc-UGUGUGuuGUGGCAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 38721 0.66 0.962191
Target:  5'- cGCCUccucGGCGCGCAGCAaCGUCuGUCg -3'
miRNA:   3'- uCGGAcc--CUGUGUGUUGUgGCAG-CAG- -5'
1571 3' -55.7 NC_001347.2 + 147864 0.66 0.962191
Target:  5'- cGGCCUGGGcgcCGCGgGAaagGCCGUUGg- -3'
miRNA:   3'- -UCGGACCCu--GUGUgUUg--UGGCAGCag -5'
1571 3' -55.7 NC_001347.2 + 88690 0.66 0.961171
Target:  5'- cGCCcugcUGGGACgACGCAAUggcggcggaucccaGCCcugaGUCGUCg -3'
miRNA:   3'- uCGG----ACCCUG-UGUGUUG--------------UGG----CAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 39515 0.66 0.958719
Target:  5'- gGGCggGGGGCGCgGCGACauGCCGUUG-Cg -3'
miRNA:   3'- -UCGgaCCCUGUG-UGUUG--UGGCAGCaG- -5'
1571 3' -55.7 NC_001347.2 + 142386 0.66 0.955036
Target:  5'- cGCCggggGGGAggUGCACGAC-CUGUCGg- -3'
miRNA:   3'- uCGGa---CCCU--GUGUGUUGuGGCAGCag -5'
1571 3' -55.7 NC_001347.2 + 127757 0.66 0.954655
Target:  5'- gGGCaaaCUGGGGCuGCGCAucaucACGCCGUuccccgccugcacCGUCg -3'
miRNA:   3'- -UCG---GACCCUG-UGUGU-----UGUGGCA-------------GCAG- -5'
1571 3' -55.7 NC_001347.2 + 99541 0.66 0.952722
Target:  5'- cGGCC-GGGuCGCGCGGCAgugacagcuugugacCCGcgcUCGUCg -3'
miRNA:   3'- -UCGGaCCCuGUGUGUUGU---------------GGC---AGCAG- -5'
1571 3' -55.7 NC_001347.2 + 65982 0.66 0.950733
Target:  5'- cGCCUGGGcgcgACGCGgcgugcugcugcuCAACACCGUguUCa -3'
miRNA:   3'- uCGGACCC----UGUGU-------------GUUGUGGCAgcAG- -5'
1571 3' -55.7 NC_001347.2 + 67930 0.66 0.947015
Target:  5'- gGGCC-GGGACu-----CACCGUCGUUc -3'
miRNA:   3'- -UCGGaCCCUGuguguuGUGGCAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 158819 0.67 0.938103
Target:  5'- uGGCCaacaagcGGGACGaaaAACACCGUCacGUCg -3'
miRNA:   3'- -UCGGa------CCCUGUgugUUGUGGCAG--CAG- -5'
1571 3' -55.7 NC_001347.2 + 4098 0.67 0.933308
Target:  5'- gGGgCUGGGACguuuuuagucACACAucgGCAUCuUCGUCa -3'
miRNA:   3'- -UCgGACCCUG----------UGUGU---UGUGGcAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 2130 0.67 0.933308
Target:  5'- uGCCUaacGcGGACGCGC-ACGCgGUgGUCg -3'
miRNA:   3'- uCGGA---C-CCUGUGUGuUGUGgCAgCAG- -5'
1571 3' -55.7 NC_001347.2 + 185521 0.67 0.926734
Target:  5'- aAGCC-GGGGCGCcacuccuacgccacGCGAUugGCCGUCGg- -3'
miRNA:   3'- -UCGGaCCCUGUG--------------UGUUG--UGGCAGCag -5'
1571 3' -55.7 NC_001347.2 + 2373 0.67 0.923034
Target:  5'- uGGCgCUGGGACGCGaguCGGCGcCCGcCGcCg -3'
miRNA:   3'- -UCG-GACCCUGUGU---GUUGU-GGCaGCaG- -5'
1571 3' -55.7 NC_001347.2 + 153759 0.67 0.923034
Target:  5'- gGGUC-GGGuCGCGCcaguGCGCCGUCGa- -3'
miRNA:   3'- -UCGGaCCCuGUGUGu---UGUGGCAGCag -5'
1571 3' -55.7 NC_001347.2 + 183479 0.68 0.905916
Target:  5'- cGGCCUcGGGagacGCGCGCAGCcCCagcgCGUCg -3'
miRNA:   3'- -UCGGA-CCC----UGUGUGUUGuGGca--GCAG- -5'
1571 3' -55.7 NC_001347.2 + 2457 0.68 0.905916
Target:  5'- cGCgCUGGGACGCGCuGCACCu----- -3'
miRNA:   3'- uCG-GACCCUGUGUGuUGUGGcagcag -5'
1571 3' -55.7 NC_001347.2 + 17767 0.68 0.905916
Target:  5'- aAGCCUGGGGCACcuaucucCGACAgCG-CGa- -3'
miRNA:   3'- -UCGGACCCUGUGu------GUUGUgGCaGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.