miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1571 3' -55.7 NC_001347.2 + 189284 1.08 0.005062
Target:  5'- cAGCCUGGGACACACAACACCGUCGUCc -3'
miRNA:   3'- -UCGGACCCUGUGUGUUGUGGCAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 78626 0.79 0.370365
Target:  5'- gAGCCUGGGcGCGCGCGACGCCGa---- -3'
miRNA:   3'- -UCGGACCC-UGUGUGUUGUGGCagcag -5'
1571 3' -55.7 NC_001347.2 + 193167 0.76 0.520195
Target:  5'- uGCCUGGGcACGCGCGucgGCCG-CGUCg -3'
miRNA:   3'- uCGGACCC-UGUGUGUug-UGGCaGCAG- -5'
1571 3' -55.7 NC_001347.2 + 130685 0.75 0.549219
Target:  5'- gAGCCacGGAUcgACACGgggACACCGUCGUCu -3'
miRNA:   3'- -UCGGacCCUG--UGUGU---UGUGGCAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 180016 0.73 0.638547
Target:  5'- cGCCuUGGGACACugGGCGuuGUUGa- -3'
miRNA:   3'- uCGG-ACCCUGUGugUUGUggCAGCag -5'
1571 3' -55.7 NC_001347.2 + 173986 0.73 0.648543
Target:  5'- uGCCUGGGaacgcGCGCACGGCGCgGUCc-- -3'
miRNA:   3'- uCGGACCC-----UGUGUGUUGUGgCAGcag -5'
1571 3' -55.7 NC_001347.2 + 147905 0.72 0.727384
Target:  5'- gGGCCgUGGGugGCGCGgugGCcuCCGUgGUCg -3'
miRNA:   3'- -UCGG-ACCCugUGUGU---UGu-GGCAgCAG- -5'
1571 3' -55.7 NC_001347.2 + 190162 0.72 0.727384
Target:  5'- uGCCggcauggGGGGCGCcaaAACGCCGUCGg- -3'
miRNA:   3'- uCGGa------CCCUGUGug-UUGUGGCAGCag -5'
1571 3' -55.7 NC_001347.2 + 81617 0.71 0.746479
Target:  5'- aAGCCgUGGcauugaGACGCACGGCGCCGcCGcCg -3'
miRNA:   3'- -UCGG-ACC------CUGUGUGUUGUGGCaGCaG- -5'
1571 3' -55.7 NC_001347.2 + 92359 0.71 0.750254
Target:  5'- uAGCCUucGGGACGCGgcagcaaccaggcgcCGGCGCCGccuagCGUCa -3'
miRNA:   3'- -UCGGA--CCCUGUGU---------------GUUGUGGCa----GCAG- -5'
1571 3' -55.7 NC_001347.2 + 191671 0.71 0.774382
Target:  5'- uGGCgUGGcGCACGCAGCgACCGUaguUGUCg -3'
miRNA:   3'- -UCGgACCcUGUGUGUUG-UGGCA---GCAG- -5'
1571 3' -55.7 NC_001347.2 + 182886 0.7 0.801193
Target:  5'- gAG-CUGGGccuCGCGCGGCucGCCGUCGUUc -3'
miRNA:   3'- -UCgGACCCu--GUGUGUUG--UGGCAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 117401 0.7 0.801193
Target:  5'- cAGCUgaGGGAgcuCACcCAACACCGUCGcCa -3'
miRNA:   3'- -UCGGa-CCCU---GUGuGUUGUGGCAGCaG- -5'
1571 3' -55.7 NC_001347.2 + 97602 0.7 0.818351
Target:  5'- uGUCUGGGGC-CGguGCugccGCCGUCGUUg -3'
miRNA:   3'- uCGGACCCUGuGUguUG----UGGCAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 176481 0.7 0.834863
Target:  5'- uGCCgccaGACcuccaACAACACCGUCGUCg -3'
miRNA:   3'- uCGGacc-CUGug---UGUUGUGGCAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 172168 0.69 0.850672
Target:  5'- cAGUgUGGGcuuCGCGCGGCACCGUguUCg -3'
miRNA:   3'- -UCGgACCCu--GUGUGUUGUGGCAgcAG- -5'
1571 3' -55.7 NC_001347.2 + 44251 0.69 0.850672
Target:  5'- gGGCUUGGcGACccuucCACGACuGCUGUUGUCa -3'
miRNA:   3'- -UCGGACC-CUGu----GUGUUG-UGGCAGCAG- -5'
1571 3' -55.7 NC_001347.2 + 201180 0.69 0.858295
Target:  5'- uGCUUGGGGCAUAaAACACCGaCGc- -3'
miRNA:   3'- uCGGACCCUGUGUgUUGUGGCaGCag -5'
1571 3' -55.7 NC_001347.2 + 48259 0.68 0.886113
Target:  5'- cGGCCUGGGGCGCGgGcucguucguggcuACGCUGauaGUCc -3'
miRNA:   3'- -UCGGACCCUGUGUgU-------------UGUGGCag-CAG- -5'
1571 3' -55.7 NC_001347.2 + 101996 0.68 0.893381
Target:  5'- aGGCC-GGGGCGCACAgcuuaACGCCGcUGa- -3'
miRNA:   3'- -UCGGaCCCUGUGUGU-----UGUGGCaGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.