miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1571 5' -52 NC_001347.2 + 165589 0.66 0.99652
Target:  5'- -aGGCGGCGcggCAcUUCGUCgCCCAGUc -3'
miRNA:   3'- ugUUGCUGCa--GUaAAGCGGaGGGUCA- -5'
1571 5' -52 NC_001347.2 + 62543 0.66 0.995271
Target:  5'- gGCGGCGAUgGUCAUgu--UCUCCCAGg -3'
miRNA:   3'- -UGUUGCUG-CAGUAaagcGGAGGGUCa -5'
1571 5' -52 NC_001347.2 + 83357 0.66 0.995271
Target:  5'- -uGACcAUGUCAUUUCGgCUgCCCAGc -3'
miRNA:   3'- ugUUGcUGCAGUAAAGCgGA-GGGUCa -5'
1571 5' -52 NC_001347.2 + 35878 0.66 0.995271
Target:  5'- cCGACGACGUgGagUUCG-UUCCCGGg -3'
miRNA:   3'- uGUUGCUGCAgUa-AAGCgGAGGGUCa -5'
1571 5' -52 NC_001347.2 + 38025 0.66 0.995271
Target:  5'- gGCGGCgGGCGcCGacUCGCgUCCCAGc -3'
miRNA:   3'- -UGUUG-CUGCaGUaaAGCGgAGGGUCa -5'
1571 5' -52 NC_001347.2 + 158378 0.66 0.994523
Target:  5'- gGCAGCG-CGUCuacgagcUCGUCUCCgAGa -3'
miRNA:   3'- -UGUUGCuGCAGuaa----AGCGGAGGgUCa -5'
1571 5' -52 NC_001347.2 + 74140 0.66 0.994523
Target:  5'- aGCGACGGCGUCGc-UC-CCaCCCGGg -3'
miRNA:   3'- -UGUUGCUGCAGUaaAGcGGaGGGUCa -5'
1571 5' -52 NC_001347.2 + 172205 0.67 0.991687
Target:  5'- gACggUGugGUCAUUgUGCCcgCCCAa- -3'
miRNA:   3'- -UGuuGCugCAGUAAaGCGGa-GGGUca -5'
1571 5' -52 NC_001347.2 + 203849 0.67 0.991234
Target:  5'- gGCAGCGGgGgugguaguacccaCAUUUUGCuCUCCCGGa -3'
miRNA:   3'- -UGUUGCUgCa------------GUAAAGCG-GAGGGUCa -5'
1571 5' -52 NC_001347.2 + 63785 0.67 0.990518
Target:  5'- uACAACGAauUCAccagcUUUCGCCUgCCCAc- -3'
miRNA:   3'- -UGUUGCUgcAGU-----AAAGCGGA-GGGUca -5'
1571 5' -52 NC_001347.2 + 115677 0.67 0.990518
Target:  5'- cAguACGGCGaUCAUgggCGCC-CCCAGc -3'
miRNA:   3'- -UguUGCUGC-AGUAaa-GCGGaGGGUCa -5'
1571 5' -52 NC_001347.2 + 88907 0.67 0.987798
Target:  5'- -aGACGGCGUCG--UCGaCCUCCaGGUc -3'
miRNA:   3'- ugUUGCUGCAGUaaAGC-GGAGGgUCA- -5'
1571 5' -52 NC_001347.2 + 129287 0.68 0.986229
Target:  5'- cACGGCGGCGauucgacgCAUcuucgUCGCCgaguUCCCAGUu -3'
miRNA:   3'- -UGUUGCUGCa-------GUAa----AGCGG----AGGGUCA- -5'
1571 5' -52 NC_001347.2 + 170069 0.68 0.986229
Target:  5'- gGCGGCGuCGUCAgUUgGCgUCCCgAGUc -3'
miRNA:   3'- -UGUUGCuGCAGUaAAgCGgAGGG-UCA- -5'
1571 5' -52 NC_001347.2 + 97014 0.68 0.985729
Target:  5'- cGCGGCGGCGgaggauccaaggccUCcag-CGCCUCCUGGUg -3'
miRNA:   3'- -UGUUGCUGC--------------AGuaaaGCGGAGGGUCA- -5'
1571 5' -52 NC_001347.2 + 121122 0.68 0.982632
Target:  5'- -gGACGACGUCcuUUUCGCCcuggaUCCCu-- -3'
miRNA:   3'- ugUUGCUGCAGu-AAAGCGG-----AGGGuca -5'
1571 5' -52 NC_001347.2 + 71114 0.69 0.973378
Target:  5'- gACGACGuAUGUCug-UCGUCUCCCu-- -3'
miRNA:   3'- -UGUUGC-UGCAGuaaAGCGGAGGGuca -5'
1571 5' -52 NC_001347.2 + 67744 0.69 0.967602
Target:  5'- uGCggUGGucuuuUGUCucUUCGCCUCCCGGa -3'
miRNA:   3'- -UGuuGCU-----GCAGuaAAGCGGAGGGUCa -5'
1571 5' -52 NC_001347.2 + 109474 0.69 0.964403
Target:  5'- gGCGGCGGCGcCAUggcgggCGCCUCCa--- -3'
miRNA:   3'- -UGUUGCUGCaGUAaa----GCGGAGGguca -5'
1571 5' -52 NC_001347.2 + 228684 0.7 0.960989
Target:  5'- aGCAGuCGGCGUCAaagUCGCUUgcgcugucggCCCAGUc -3'
miRNA:   3'- -UGUU-GCUGCAGUaa-AGCGGA----------GGGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.