miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15710 5' -56.9 NC_004065.1 + 81808 0.66 0.954938
Target:  5'- aUCUCGUa-CUCGGAGGGgaAgguguagauuugacgUCGGGGa -3'
miRNA:   3'- -AGGGUAgcGAGCCUCCCgaU---------------AGCUCC- -5'
15710 5' -56.9 NC_004065.1 + 140730 0.66 0.953432
Target:  5'- -gCCG-CGCUCGGucaacguGGGCaagGUgGAGGa -3'
miRNA:   3'- agGGUaGCGAGCCu------CCCGa--UAgCUCC- -5'
15710 5' -56.9 NC_004065.1 + 20813 0.66 0.953432
Target:  5'- uUCCaaCAUCGUccuUCucGAGGGUcGUCGAGGa -3'
miRNA:   3'- -AGG--GUAGCG---AGc-CUCCCGaUAGCUCC- -5'
15710 5' -56.9 NC_004065.1 + 80561 0.66 0.936032
Target:  5'- aCCCggagggcuucgggGUCGauagcCUCGGGGGGgaGUcCGAGGa -3'
miRNA:   3'- aGGG-------------UAGC-----GAGCCUCCCgaUA-GCUCC- -5'
15710 5' -56.9 NC_004065.1 + 31291 0.66 0.931725
Target:  5'- aCCCGUaCGacaCGcGAGGGUUG-CGAGGa -3'
miRNA:   3'- aGGGUA-GCga-GC-CUCCCGAUaGCUCC- -5'
15710 5' -56.9 NC_004065.1 + 109825 0.66 0.929753
Target:  5'- cCUCGUCGCcguccugcugcggCGGGGGGCcAUCGcgcAGGu -3'
miRNA:   3'- aGGGUAGCGa------------GCCUCCCGaUAGC---UCC- -5'
15710 5' -56.9 NC_004065.1 + 135663 0.67 0.92673
Target:  5'- -gCCGUaacgCGCgUCGGGGGGCUcgCgcaGAGGu -3'
miRNA:   3'- agGGUA----GCG-AGCCUCCCGAuaG---CUCC- -5'
15710 5' -56.9 NC_004065.1 + 68279 0.67 0.921517
Target:  5'- aUCCUggCGCUguucgaGGAGGGCUcggCGAcGGa -3'
miRNA:   3'- -AGGGuaGCGAg-----CCUCCCGAua-GCU-CC- -5'
15710 5' -56.9 NC_004065.1 + 150918 0.67 0.921517
Target:  5'- gUCCgAcggCgGCUcCGGcGGGUUGUCGAGGu -3'
miRNA:   3'- -AGGgUa--G-CGA-GCCuCCCGAUAGCUCC- -5'
15710 5' -56.9 NC_004065.1 + 139470 0.67 0.916084
Target:  5'- -aCCAUCagGUUCGaGGGGGCcGUCGGGcGg -3'
miRNA:   3'- agGGUAG--CGAGC-CUCCCGaUAGCUC-C- -5'
15710 5' -56.9 NC_004065.1 + 127128 0.68 0.898482
Target:  5'- cCCCAUCGCggCGGcGGcGCUAcCGGcGGc -3'
miRNA:   3'- aGGGUAGCGa-GCCuCC-CGAUaGCU-CC- -5'
15710 5' -56.9 NC_004065.1 + 107161 0.68 0.898482
Target:  5'- cUCCAacUCGCUCugccgccaGAGGGCgGUCGAGa -3'
miRNA:   3'- aGGGU--AGCGAGc-------CUCCCGaUAGCUCc -5'
15710 5' -56.9 NC_004065.1 + 101837 0.68 0.898482
Target:  5'- -aCUAguaaUGCUCGcGGGGGC-GUCGGGGg -3'
miRNA:   3'- agGGUa---GCGAGC-CUCCCGaUAGCUCC- -5'
15710 5' -56.9 NC_004065.1 + 92062 0.68 0.898482
Target:  5'- aUCUCAcgcgCGCUCGGAGGGCcgcgCGuuGc -3'
miRNA:   3'- -AGGGUa---GCGAGCCUCCCGaua-GCucC- -5'
15710 5' -56.9 NC_004065.1 + 141421 0.68 0.892187
Target:  5'- -gCCAUCGCcgagcucaUGGAGGGCcgcgaCGAGGg -3'
miRNA:   3'- agGGUAGCGa-------GCCUCCCGaua--GCUCC- -5'
15710 5' -56.9 NC_004065.1 + 130957 0.68 0.864229
Target:  5'- cCCCAUCGgcaacauguucgcCUCGGAGGuCUGccucuguggacUCGGGGa -3'
miRNA:   3'- aGGGUAGC-------------GAGCCUCCcGAU-----------AGCUCC- -5'
15710 5' -56.9 NC_004065.1 + 148833 0.69 0.834644
Target:  5'- gCCC-UCGCUCGGccacgaGGcGGCcgccgcgAUCGAGGa -3'
miRNA:   3'- aGGGuAGCGAGCC------UC-CCGa------UAGCUCC- -5'
15710 5' -56.9 NC_004065.1 + 42829 0.69 0.826629
Target:  5'- cUCCCc-CGUgCGGAGGGUcgGUCGAGa -3'
miRNA:   3'- -AGGGuaGCGaGCCUCCCGa-UAGCUCc -5'
15710 5' -56.9 NC_004065.1 + 129890 0.7 0.810119
Target:  5'- gCUCAUCgGCU-GGAGGcGCUgAUCGGGGu -3'
miRNA:   3'- aGGGUAG-CGAgCCUCC-CGA-UAGCUCC- -5'
15710 5' -56.9 NC_004065.1 + 32758 0.71 0.729379
Target:  5'- gCCCAUgCGCUCGuAGcGCUGcUCGAGGa -3'
miRNA:   3'- aGGGUA-GCGAGCcUCcCGAU-AGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.