Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15710 | 5' | -56.9 | NC_004065.1 | + | 80561 | 0.66 | 0.936032 |
|
Target: 5'- aCCCggagggcuucgggGUCGauagcCUCGGGGGGgaGUcCGAGGa -3' miRNA: 3'- aGGG-------------UAGC-----GAGCCUCCCgaUA-GCUCC- -5' |
|||||||
| 15710 | 5' | -56.9 | NC_004065.1 | + | 68279 | 0.67 | 0.921517 |
|
Target: 5'- aUCCUggCGCUguucgaGGAGGGCUcggCGAcGGa -3' miRNA: 3'- -AGGGuaGCGAg-----CCUCCCGAua-GCU-CC- -5' |
|||||||
| 15710 | 5' | -56.9 | NC_004065.1 | + | 42829 | 0.69 | 0.826629 |
|
Target: 5'- cUCCCc-CGUgCGGAGGGUcgGUCGAGa -3' miRNA: 3'- -AGGGuaGCGaGCCUCCCGa-UAGCUCc -5' |
|||||||
| 15710 | 5' | -56.9 | NC_004065.1 | + | 32758 | 0.71 | 0.729379 |
|
Target: 5'- gCCCAUgCGCUCGuAGcGCUGcUCGAGGa -3' miRNA: 3'- aGGGUA-GCGAGCcUCcCGAU-AGCUCC- -5' |
|||||||
| 15710 | 5' | -56.9 | NC_004065.1 | + | 31291 | 0.66 | 0.931725 |
|
Target: 5'- aCCCGUaCGacaCGcGAGGGUUG-CGAGGa -3' miRNA: 3'- aGGGUA-GCga-GC-CUCCCGAUaGCUCC- -5' |
|||||||
| 15710 | 5' | -56.9 | NC_004065.1 | + | 20813 | 0.66 | 0.953432 |
|
Target: 5'- uUCCaaCAUCGUccuUCucGAGGGUcGUCGAGGa -3' miRNA: 3'- -AGG--GUAGCG---AGc-CUCCCGaUAGCUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home