Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15710 | 5' | -56.9 | NC_004065.1 | + | 107161 | 0.68 | 0.898482 |
Target: 5'- cUCCAacUCGCUCugccgccaGAGGGCgGUCGAGa -3' miRNA: 3'- aGGGU--AGCGAGc-------CUCCCGaUAGCUCc -5' |
|||||||
15710 | 5' | -56.9 | NC_004065.1 | + | 127128 | 0.68 | 0.898482 |
Target: 5'- cCCCAUCGCggCGGcGGcGCUAcCGGcGGc -3' miRNA: 3'- aGGGUAGCGa-GCCuCC-CGAUaGCU-CC- -5' |
|||||||
15710 | 5' | -56.9 | NC_004065.1 | + | 150918 | 0.67 | 0.921517 |
Target: 5'- gUCCgAcggCgGCUcCGGcGGGUUGUCGAGGu -3' miRNA: 3'- -AGGgUa--G-CGA-GCCuCCCGAUAGCUCC- -5' |
|||||||
15710 | 5' | -56.9 | NC_004065.1 | + | 68279 | 0.67 | 0.921517 |
Target: 5'- aUCCUggCGCUguucgaGGAGGGCUcggCGAcGGa -3' miRNA: 3'- -AGGGuaGCGAg-----CCUCCCGAua-GCU-CC- -5' |
|||||||
15710 | 5' | -56.9 | NC_004065.1 | + | 135663 | 0.67 | 0.92673 |
Target: 5'- -gCCGUaacgCGCgUCGGGGGGCUcgCgcaGAGGu -3' miRNA: 3'- agGGUA----GCG-AGCCUCCCGAuaG---CUCC- -5' |
|||||||
15710 | 5' | -56.9 | NC_004065.1 | + | 118511 | 0.71 | 0.729379 |
Target: 5'- gCCUGUCGCUCGGGuucGGCaucuucguUCGAGGa -3' miRNA: 3'- aGGGUAGCGAGCCUc--CCGau------AGCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home