miRNA display CGI


Results 1 - 20 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15711 3' -65.5 NC_004065.1 + 101217 0.66 0.596757
Target:  5'- cGUCCGCCuucACgucggucugaaCGCCagagguGCCGCCGGCgacGGCGc -3'
miRNA:   3'- -UAGGCGG---UG-----------GCGG------UGGCGGUCG---CCGC- -5'
15711 3' -65.5 NC_004065.1 + 80320 0.66 0.596757
Target:  5'- -gCCGgCGCgGCCGCgGCCcccCGGCGu -3'
miRNA:   3'- uaGGCgGUGgCGGUGgCGGuc-GCCGC- -5'
15711 3' -65.5 NC_004065.1 + 88363 0.66 0.596757
Target:  5'- -aCCGCUcUCGuCCGCgGCC-GCGGCa -3'
miRNA:   3'- uaGGCGGuGGC-GGUGgCGGuCGCCGc -5'
15711 3' -65.5 NC_004065.1 + 87619 0.66 0.596757
Target:  5'- -gUCGCCAggucgaUCGUCAgCGCCAGCucgGGCGc -3'
miRNA:   3'- uaGGCGGU------GGCGGUgGCGGUCG---CCGC- -5'
15711 3' -65.5 NC_004065.1 + 77267 0.66 0.596757
Target:  5'- -aCCGCCACCGUUACCGCUAcCa--- -3'
miRNA:   3'- uaGGCGGUGGCGGUGGCGGUcGccgc -5'
15711 3' -65.5 NC_004065.1 + 124589 0.66 0.596757
Target:  5'- cGUCCGUCGCCacGUCccgcaccagcGCgGCCAGCaGCGg -3'
miRNA:   3'- -UAGGCGGUGG--CGG----------UGgCGGUCGcCGC- -5'
15711 3' -65.5 NC_004065.1 + 189861 0.66 0.596757
Target:  5'- -gUCGCCGCgagggguuUGCUGCCGUCGGCaGCGu -3'
miRNA:   3'- uaGGCGGUG--------GCGGUGGCGGUCGcCGC- -5'
15711 3' -65.5 NC_004065.1 + 161527 0.66 0.596757
Target:  5'- cGUCCGCCGCC-UCACCugaGCCuGCucGGCc -3'
miRNA:   3'- -UAGGCGGUGGcGGUGG---CGGuCG--CCGc -5'
15711 3' -65.5 NC_004065.1 + 100018 0.66 0.587387
Target:  5'- -aUCGCCGgcUCGUCGCUGCCucggGGCGGUa -3'
miRNA:   3'- uaGGCGGU--GGCGGUGGCGG----UCGCCGc -5'
15711 3' -65.5 NC_004065.1 + 154254 0.66 0.587387
Target:  5'- -gCCGaCCGCCGCCuCCGCCucccccgggucAGCgcuggGGCa -3'
miRNA:   3'- uaGGC-GGUGGCGGuGGCGG-----------UCG-----CCGc -5'
15711 3' -65.5 NC_004065.1 + 115838 0.66 0.587387
Target:  5'- ---aGCCAUCuCCucGCgGCCGGCGGCGc -3'
miRNA:   3'- uaggCGGUGGcGG--UGgCGGUCGCCGC- -5'
15711 3' -65.5 NC_004065.1 + 140858 0.66 0.587387
Target:  5'- -aCgGCC-CUgaagGCCGCCGCCAGCGaGUc -3'
miRNA:   3'- uaGgCGGuGG----CGGUGGCGGUCGC-CGc -5'
15711 3' -65.5 NC_004065.1 + 194819 0.66 0.587387
Target:  5'- --aCGCCguggcggugGCCGCCacguucuccagGCCGaccaCGGCGGCGg -3'
miRNA:   3'- uagGCGG---------UGGCGG-----------UGGCg---GUCGCCGC- -5'
15711 3' -65.5 NC_004065.1 + 93354 0.66 0.587387
Target:  5'- -cCCGCCGCCgGCCAgacCCGCCcGUcGCu -3'
miRNA:   3'- uaGGCGGUGG-CGGU---GGCGGuCGcCGc -5'
15711 3' -65.5 NC_004065.1 + 198945 0.66 0.587387
Target:  5'- -gCgGCCAagGCCGCCGCCAuGaggaaGGCGu -3'
miRNA:   3'- uaGgCGGUggCGGUGGCGGU-Cg----CCGC- -5'
15711 3' -65.5 NC_004065.1 + 97009 0.66 0.587387
Target:  5'- cGUCUGCUGCCGCUGCUGCUAcugucGUGGg- -3'
miRNA:   3'- -UAGGCGGUGGCGGUGGCGGU-----CGCCgc -5'
15711 3' -65.5 NC_004065.1 + 115195 0.66 0.587387
Target:  5'- gAUCCgGCCGUgGCCGCCGCgAcGgGGCa -3'
miRNA:   3'- -UAGG-CGGUGgCGGUGGCGgU-CgCCGc -5'
15711 3' -65.5 NC_004065.1 + 77491 0.66 0.587387
Target:  5'- -gCUGCCGaagaaGCCGgCGCCGGCGGa- -3'
miRNA:   3'- uaGGCGGUgg---CGGUgGCGGUCGCCgc -5'
15711 3' -65.5 NC_004065.1 + 126720 0.66 0.578045
Target:  5'- -gCgGCgACCGCUgagccuGCCGCC-GCGGCc -3'
miRNA:   3'- uaGgCGgUGGCGG------UGGCGGuCGCCGc -5'
15711 3' -65.5 NC_004065.1 + 164408 0.66 0.578045
Target:  5'- uUCCGCCGCCG-UACCGggauCCAGUuguacaGGCa -3'
miRNA:   3'- uAGGCGGUGGCgGUGGC----GGUCG------CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.