miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15711 5' -51.7 NC_004065.1 + 135829 0.66 0.99518
Target:  5'- -gCGUCGGcgaucUGGCGACCucgucgaUGGGUGu--- -3'
miRNA:   3'- aaGCAGCC-----ACCGCUGG-------ACUCAUuuuu -5'
15711 5' -51.7 NC_004065.1 + 159906 0.66 0.994485
Target:  5'- gUUCGUCGGUGGCGAgacguucaUUUGA-UAAGGu -3'
miRNA:   3'- -AAGCAGCCACCGCU--------GGACUcAUUUUu -5'
15711 5' -51.7 NC_004065.1 + 102618 0.67 0.990361
Target:  5'- gUCGaCGGUGaCGGCCUGGG-AGAGg -3'
miRNA:   3'- aAGCaGCCACcGCUGGACUCaUUUUu -5'
15711 5' -51.7 NC_004065.1 + 122731 0.67 0.989023
Target:  5'- -gCGUCGGUaGUGGCCaGAGgcAAGAg -3'
miRNA:   3'- aaGCAGCCAcCGCUGGaCUCauUUUU- -5'
15711 5' -51.7 NC_004065.1 + 62364 0.68 0.975242
Target:  5'- uUUCGacggCGGUGGCGGCggGGGUGGu-- -3'
miRNA:   3'- -AAGCa---GCCACCGCUGgaCUCAUUuuu -5'
15711 5' -51.7 NC_004065.1 + 211528 0.69 0.966512
Target:  5'- gUCGUCGGUGGCGACg---------- -3'
miRNA:   3'- aAGCAGCCACCGCUGgacucauuuuu -5'
15711 5' -51.7 NC_004065.1 + 37573 0.71 0.897958
Target:  5'- gUUCGUCGGUGGCGcucaauGCCgGAGa----- -3'
miRNA:   3'- -AAGCAGCCACCGC------UGGaCUCauuuuu -5'
15711 5' -51.7 NC_004065.1 + 74601 0.72 0.891224
Target:  5'- gUCGguggCGGUGGCGGCC-GAGUu---- -3'
miRNA:   3'- aAGCa---GCCACCGCUGGaCUCAuuuuu -5'
15711 5' -51.7 NC_004065.1 + 63456 0.72 0.877051
Target:  5'- --aGUCGGUGGUGuucACCUGcGUGGAGAg -3'
miRNA:   3'- aagCAGCCACCGC---UGGACuCAUUUUU- -5'
15711 5' -51.7 NC_004065.1 + 102549 0.74 0.79358
Target:  5'- cUCGUCGGUGGCG-CCgGGGUc---- -3'
miRNA:   3'- aAGCAGCCACCGCuGGaCUCAuuuuu -5'
15711 5' -51.7 NC_004065.1 + 173313 0.74 0.784257
Target:  5'- -gUGUCGGUcGGCGACgaGGGUGAGGu -3'
miRNA:   3'- aaGCAGCCA-CCGCUGgaCUCAUUUUu -5'
15711 5' -51.7 NC_004065.1 + 190768 0.76 0.684795
Target:  5'- ----aCGGUGGCGGCCUG-GUAAAAAa -3'
miRNA:   3'- aagcaGCCACCGCUGGACuCAUUUUU- -5'
15711 5' -51.7 NC_004065.1 + 177396 1.04 0.018626
Target:  5'- gUUCGUCGGUGGCGACCUGAGUAAAAAa -3'
miRNA:   3'- -AAGCAGCCACCGCUGGACUCAUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.