miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15712 3' -49.5 NC_004065.1 + 72954 0.66 0.999723
Target:  5'- cACUCgAUCUUUUcGUCCGCGacaCGuAGAc -3'
miRNA:   3'- -UGAG-UAGAAAAuCAGGCGCc--GCuUCU- -5'
15712 3' -49.5 NC_004065.1 + 225366 0.66 0.999651
Target:  5'- cCUCugucUCUggacGcCCGCGGCGggGGc -3'
miRNA:   3'- uGAGu---AGAaaauCaGGCGCCGCuuCU- -5'
15712 3' -49.5 NC_004065.1 + 23977 0.66 0.999564
Target:  5'- aACUCAaag--UAGUCCuCGGCGAuGAg -3'
miRNA:   3'- -UGAGUagaaaAUCAGGcGCCGCUuCU- -5'
15712 3' -49.5 NC_004065.1 + 142653 0.66 0.999564
Target:  5'- uGCUCAggg---AGUUCGUGGcCGAGGGg -3'
miRNA:   3'- -UGAGUagaaaaUCAGGCGCC-GCUUCU- -5'
15712 3' -49.5 NC_004065.1 + 198753 0.66 0.999564
Target:  5'- cCUCcUCUcc--GUCCGUGGCGAccgcAGAg -3'
miRNA:   3'- uGAGuAGAaaauCAGGCGCCGCU----UCU- -5'
15712 3' -49.5 NC_004065.1 + 154000 0.66 0.999459
Target:  5'- -gUCGUCUcugucguGUUCGCGGCGgcGGc -3'
miRNA:   3'- ugAGUAGAaaau---CAGGCGCCGCuuCU- -5'
15712 3' -49.5 NC_004065.1 + 59554 0.66 0.999459
Target:  5'- aGCUCGcCgagcGGUCUGCGGCGGc-- -3'
miRNA:   3'- -UGAGUaGaaaaUCAGGCGCCGCUucu -5'
15712 3' -49.5 NC_004065.1 + 176975 0.66 0.999332
Target:  5'- --gUAUCUUc--GUCCGCGGCcAGGAa -3'
miRNA:   3'- ugaGUAGAAaauCAGGCGCCGcUUCU- -5'
15712 3' -49.5 NC_004065.1 + 81983 0.66 0.999332
Target:  5'- -gUCGUCgacgUUU--UCgGCGGCGggGAa -3'
miRNA:   3'- ugAGUAGa---AAAucAGgCGCCGCuuCU- -5'
15712 3' -49.5 NC_004065.1 + 80455 0.66 0.999332
Target:  5'- gUUCGUaac---GUUCGCGGCGAGGGc -3'
miRNA:   3'- uGAGUAgaaaauCAGGCGCCGCUUCU- -5'
15712 3' -49.5 NC_004065.1 + 223746 0.66 0.999332
Target:  5'- gAUUgAUCUUUaccGUCCGCGGgGAugcGGAc -3'
miRNA:   3'- -UGAgUAGAAAau-CAGGCGCCgCU---UCU- -5'
15712 3' -49.5 NC_004065.1 + 139584 0.67 0.999181
Target:  5'- cACUCGggaggUGG-CCGCGGCGAu-- -3'
miRNA:   3'- -UGAGUagaaaAUCaGGCGCCGCUucu -5'
15712 3' -49.5 NC_004065.1 + 198232 0.67 0.999181
Target:  5'- --aCAUCUUUUAcaUCgGgGGCGAGGAg -3'
miRNA:   3'- ugaGUAGAAAAUc-AGgCgCCGCUUCU- -5'
15712 3' -49.5 NC_004065.1 + 27363 0.67 0.999181
Target:  5'- gAC-CAUCU---GGuUCCGCGGCGAc-- -3'
miRNA:   3'- -UGaGUAGAaaaUC-AGGCGCCGCUucu -5'
15712 3' -49.5 NC_004065.1 + 104144 0.67 0.999147
Target:  5'- cCUCGUCgucgccuUCCGCGGCGGu-- -3'
miRNA:   3'- uGAGUAGaaaauc-AGGCGCCGCUucu -5'
15712 3' -49.5 NC_004065.1 + 211183 0.67 0.998536
Target:  5'- cACUCGUC----AGUCgGUGGgGGAGGa -3'
miRNA:   3'- -UGAGUAGaaaaUCAGgCGCCgCUUCU- -5'
15712 3' -49.5 NC_004065.1 + 45102 0.67 0.998509
Target:  5'- aGCUCGg-----GGUCCuccagcgGCGGCGAAGGc -3'
miRNA:   3'- -UGAGUagaaaaUCAGG-------CGCCGCUUCU- -5'
15712 3' -49.5 NC_004065.1 + 36430 0.68 0.997505
Target:  5'- gGCUCcacggucaagGUCUggcgAGaccUCUGCGGCGAAGGc -3'
miRNA:   3'- -UGAG----------UAGAaaa-UC---AGGCGCCGCUUCU- -5'
15712 3' -49.5 NC_004065.1 + 5691 0.68 0.997505
Target:  5'- -gUCAUCacgUGGUUCGUGGCGGGa- -3'
miRNA:   3'- ugAGUAGaaaAUCAGGCGCCGCUUcu -5'
15712 3' -49.5 NC_004065.1 + 137790 0.68 0.99705
Target:  5'- uGCUCGUCUgcgUAGUgUGUGuCGggGAu -3'
miRNA:   3'- -UGAGUAGAaa-AUCAgGCGCcGCuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.