miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15712 5' -55.5 NC_004065.1 + 115026 0.66 0.967549
Target:  5'- cAUC-UCGcagaUCCGCGcggccGCCAGGGcCGAGg -3'
miRNA:   3'- aUAGaAGC----AGGCGC-----CGGUCCUuGCUC- -5'
15712 5' -55.5 NC_004065.1 + 83014 0.66 0.964419
Target:  5'- gAUCUcgcagUCGUCC-CGGaCCAGGAuccaGGGg -3'
miRNA:   3'- aUAGA-----AGCAGGcGCC-GGUCCUug--CUC- -5'
15712 5' -55.5 NC_004065.1 + 39564 0.66 0.964419
Target:  5'- cGUCUUCGUCCGCGagaacCCcGGA--GAGa -3'
miRNA:   3'- aUAGAAGCAGGCGCc----GGuCCUugCUC- -5'
15712 5' -55.5 NC_004065.1 + 201288 0.66 0.964419
Target:  5'- --aCUUUGgcccUCCgGCGGCCGGGGGagGAGg -3'
miRNA:   3'- auaGAAGC----AGG-CGCCGGUCCUUg-CUC- -5'
15712 5' -55.5 NC_004065.1 + 199452 0.66 0.964419
Target:  5'- ----cUCG-CCGCGGC--GGAACGGGg -3'
miRNA:   3'- auagaAGCaGGCGCCGguCCUUGCUC- -5'
15712 5' -55.5 NC_004065.1 + 35023 0.66 0.963769
Target:  5'- -uUCUUCcuguacgacgccgaGUCCgacgggcuguacuacGCGGCCAGGAacaucgaccagcugGCGAGa -3'
miRNA:   3'- auAGAAG--------------CAGG---------------CGCCGGUCCU--------------UGCUC- -5'
15712 5' -55.5 NC_004065.1 + 203080 0.66 0.961084
Target:  5'- -----cCG-CCGCGGCCGccGGAGCGGu -3'
miRNA:   3'- auagaaGCaGGCGCCGGU--CCUUGCUc -5'
15712 5' -55.5 NC_004065.1 + 115400 0.66 0.957539
Target:  5'- gAUgaUCGUCCcCGGCgGGGucguAGCGAGg -3'
miRNA:   3'- aUAgaAGCAGGcGCCGgUCC----UUGCUC- -5'
15712 5' -55.5 NC_004065.1 + 103596 0.66 0.95378
Target:  5'- cAUCUUCcugcuggaCCGCaGCCGGGAccGCGGGc -3'
miRNA:   3'- aUAGAAGca------GGCGcCGGUCCU--UGCUC- -5'
15712 5' -55.5 NC_004065.1 + 152053 0.66 0.95378
Target:  5'- ----cUCG-CCGCGGCCAGcGucuCGGGg -3'
miRNA:   3'- auagaAGCaGGCGCCGGUC-Cuu-GCUC- -5'
15712 5' -55.5 NC_004065.1 + 121279 0.66 0.95378
Target:  5'- -cUCUugcUCGUCCGCaucGCCAGGAugcucacCGGGc -3'
miRNA:   3'- auAGA---AGCAGGCGc--CGGUCCUu------GCUC- -5'
15712 5' -55.5 NC_004065.1 + 168751 0.67 0.949802
Target:  5'- aAUUggCGUUCGCGGCCGGu--UGAGa -3'
miRNA:   3'- aUAGaaGCAGGCGCCGGUCcuuGCUC- -5'
15712 5' -55.5 NC_004065.1 + 137487 0.67 0.949802
Target:  5'- gGUCUUC--CCGUGccGCCGGGGcACGAGg -3'
miRNA:   3'- aUAGAAGcaGGCGC--CGGUCCU-UGCUC- -5'
15712 5' -55.5 NC_004065.1 + 121915 0.67 0.949802
Target:  5'- ----gUCGUUuaCGCGGCUGGGGcCGAGg -3'
miRNA:   3'- auagaAGCAG--GCGCCGGUCCUuGCUC- -5'
15712 5' -55.5 NC_004065.1 + 132634 0.67 0.949802
Target:  5'- gAUCUUCGacuaccUgCGCGGCCAccgcugucaGAACGAGa -3'
miRNA:   3'- aUAGAAGC------AgGCGCCGGUc--------CUUGCUC- -5'
15712 5' -55.5 NC_004065.1 + 123715 0.67 0.945602
Target:  5'- cGUCUUgCGcCCGaaGGUCAGGAuCGAGa -3'
miRNA:   3'- aUAGAA-GCaGGCg-CCGGUCCUuGCUC- -5'
15712 5' -55.5 NC_004065.1 + 210130 0.67 0.945602
Target:  5'- cGUCUUCGauuccUCgGCGGCgaCGGGGugGAu -3'
miRNA:   3'- aUAGAAGC-----AGgCGCCG--GUCCUugCUc -5'
15712 5' -55.5 NC_004065.1 + 173518 0.67 0.945602
Target:  5'- aAUCUcgCGUCCGUcGCCgcagcaguacuAGGAACGAc -3'
miRNA:   3'- aUAGAa-GCAGGCGcCGG-----------UCCUUGCUc -5'
15712 5' -55.5 NC_004065.1 + 148594 0.67 0.945602
Target:  5'- gAUCccCGUCCaGUucuccGCCGGGGACGAGg -3'
miRNA:   3'- aUAGaaGCAGG-CGc----CGGUCCUUGCUC- -5'
15712 5' -55.5 NC_004065.1 + 140276 0.67 0.945602
Target:  5'- -uUCUUCcaCCGCgGGCgAGGAugGAu -3'
miRNA:   3'- auAGAAGcaGGCG-CCGgUCCUugCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.