miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 210950 0.66 0.937745
Target:  5'- cGAACCUgggcgcggucuccucCUCgucgucacagauguGGGcCACcGCCGCCGUCg -3'
miRNA:   3'- aCUUGGA---------------GAG--------------CCC-GUGcUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 21303 0.66 0.937282
Target:  5'- cGAACaUC-CGuGCACGACCGCC-UCg -3'
miRNA:   3'- aCUUGgAGaGCcCGUGCUGGUGGcAG- -5'
15713 5' -57.4 NC_004065.1 + 133356 0.66 0.937282
Target:  5'- cGAuCCUCcgUCGGGCGaGcCCGCCGa- -3'
miRNA:   3'- aCUuGGAG--AGCCCGUgCuGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 229488 0.66 0.937282
Target:  5'- gGGGCgCUCgcacaggGGGCGCG-CCACCG-Cg -3'
miRNA:   3'- aCUUG-GAGag-----CCCGUGCuGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 198791 0.66 0.937282
Target:  5'- aGGGCCUCUUcgcaacacaGGaGCGCGuucGCCcuguCCGUCa -3'
miRNA:   3'- aCUUGGAGAG---------CC-CGUGC---UGGu---GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 191234 0.66 0.937282
Target:  5'- aUGGGgCUCUgCGGGCGCcag-ACCGUCa -3'
miRNA:   3'- -ACUUgGAGA-GCCCGUGcuggUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 127406 0.66 0.932526
Target:  5'- --cGCCUCUCccaGGC-CG-UCACCGUCg -3'
miRNA:   3'- acuUGGAGAGc--CCGuGCuGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 198332 0.66 0.932526
Target:  5'- -cGGCacgCUCGGGCAcCGACgCACCuUCg -3'
miRNA:   3'- acUUGga-GAGCCCGU-GCUG-GUGGcAG- -5'
15713 5' -57.4 NC_004065.1 + 163371 0.66 0.932526
Target:  5'- cGAACaCUCgcCGGGCGC--CCACCG-Cg -3'
miRNA:   3'- aCUUG-GAGa-GCCCGUGcuGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 162797 0.66 0.932526
Target:  5'- gUGAuACC-CgCGGGCGucuCGAUCACCGUg -3'
miRNA:   3'- -ACU-UGGaGaGCCCGU---GCUGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 120097 0.66 0.932526
Target:  5'- -uGACCUCcCGGGaCGCGACgGCgGcCg -3'
miRNA:   3'- acUUGGAGaGCCC-GUGCUGgUGgCaG- -5'
15713 5' -57.4 NC_004065.1 + 119827 0.66 0.927551
Target:  5'- ---cCCUCUcgaCGGGCggcggcgcgucGCGGCCGCCG-Ca -3'
miRNA:   3'- acuuGGAGA---GCCCG-----------UGCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 181545 0.66 0.927551
Target:  5'- aUGAugCUCuaUCGcGGCgacuACGG-CACCGUCa -3'
miRNA:   3'- -ACUugGAG--AGC-CCG----UGCUgGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 107592 0.66 0.927551
Target:  5'- aGAACUUCU---GCGCGAggcUCACCGUCa -3'
miRNA:   3'- aCUUGGAGAgccCGUGCU---GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 31906 0.66 0.922354
Target:  5'- cGGGCCUgaCGcGGCGCG-UCGCCGa- -3'
miRNA:   3'- aCUUGGAgaGC-CCGUGCuGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 176165 0.66 0.922354
Target:  5'- gGAgugGCCaUC-CcGGCGCGACCGCCG-Cg -3'
miRNA:   3'- aCU---UGG-AGaGcCCGUGCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 40260 0.66 0.922354
Target:  5'- gGggUUUCUgGGGCGCc-CCGCCGg- -3'
miRNA:   3'- aCuuGGAGAgCCCGUGcuGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 197672 0.66 0.922354
Target:  5'- gGGACC-CUCGccGUAcCGACCGCCGcUCg -3'
miRNA:   3'- aCUUGGaGAGCc-CGU-GCUGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 185476 0.66 0.922354
Target:  5'- gUGGugCgggUCGGGaggcaGCGccGCCACCGUCc -3'
miRNA:   3'- -ACUugGag-AGCCCg----UGC--UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 205132 0.66 0.921822
Target:  5'- gGAAgCUCUCGaGaGCaucuucaGCGacuuuGCCACCGUCg -3'
miRNA:   3'- aCUUgGAGAGC-C-CG-------UGC-----UGGUGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.