miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 197672 0.66 0.922354
Target:  5'- gGGACC-CUCGccGUAcCGACCGCCGcUCg -3'
miRNA:   3'- aCUUGGaGAGCc-CGU-GCUGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 7348 0.66 0.916936
Target:  5'- gGAGCCgUUCGGaaAgGACUACUGUCg -3'
miRNA:   3'- aCUUGGaGAGCCcgUgCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 18289 0.66 0.916936
Target:  5'- aGAucACCUCgUCGagcGGCugGACgGuCCGUCu -3'
miRNA:   3'- aCU--UGGAG-AGC---CCGugCUGgU-GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 107592 0.66 0.927551
Target:  5'- aGAACUUCU---GCGCGAggcUCACCGUCa -3'
miRNA:   3'- aCUUGGAGAgccCGUGCU---GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 90902 0.66 0.916936
Target:  5'- cUGAACgCgagCUCGGaGCA-GACCgcgucgACCGUCa -3'
miRNA:   3'- -ACUUG-Ga--GAGCC-CGUgCUGG------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 127967 0.66 0.911299
Target:  5'- aGAugCUCuUCGGcGCuaacgccCGGCCGCCG-Cg -3'
miRNA:   3'- aCUugGAG-AGCC-CGu------GCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 127406 0.66 0.932526
Target:  5'- --cGCCUCUCccaGGC-CG-UCACCGUCg -3'
miRNA:   3'- acuUGGAGAGc--CCGuGCuGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 195691 0.66 0.916936
Target:  5'- gGcuCCUCUCGucCACG-CCGCCGUa -3'
miRNA:   3'- aCuuGGAGAGCccGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 194879 0.66 0.91358
Target:  5'- -uGACCagggUCUUGGGCuucggcaucgagaccACGgcGCCGCCGUCu -3'
miRNA:   3'- acUUGG----AGAGCCCG---------------UGC--UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 210950 0.66 0.937745
Target:  5'- cGAACCUgggcgcggucuccucCUCgucgucacagauguGGGcCACcGCCGCCGUCg -3'
miRNA:   3'- aCUUGGA---------------GAG--------------CCC-GUGcUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 88360 0.66 0.911299
Target:  5'- gGGACCgcUCUCGuccgcggccgcGGCACcGCCACCGcCc -3'
miRNA:   3'- aCUUGG--AGAGC-----------CCGUGcUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 74662 0.66 0.916936
Target:  5'- cGGACCg--C-GGCGCGuCCGCCGUa -3'
miRNA:   3'- aCUUGGagaGcCCGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 110376 0.66 0.909565
Target:  5'- gGGACCUCUCGcgcaGGCcguucgaacacgccACGGCCGacggCGUCu -3'
miRNA:   3'- aCUUGGAGAGC----CCG--------------UGCUGGUg---GCAG- -5'
15713 5' -57.4 NC_004065.1 + 163371 0.66 0.932526
Target:  5'- cGAACaCUCgcCGGGCGC--CCACCG-Cg -3'
miRNA:   3'- aCUUG-GAGa-GCCCGUGcuGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 229488 0.66 0.937282
Target:  5'- gGGGCgCUCgcacaggGGGCGCG-CCACCG-Cg -3'
miRNA:   3'- aCUUG-GAGag-----CCCGUGCuGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 198791 0.66 0.937282
Target:  5'- aGGGCCUCUUcgcaacacaGGaGCGCGuucGCCcuguCCGUCa -3'
miRNA:   3'- aCUUGGAGAG---------CC-CGUGC---UGGu---GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 57032 0.66 0.911299
Target:  5'- cGAGCCauggCUCGucgucGGCACGACgGgcaaggccCCGUCa -3'
miRNA:   3'- aCUUGGa---GAGC-----CCGUGCUGgU--------GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 111903 0.66 0.91358
Target:  5'- cGcAACCUCguccgCGcGGCgACGagagacgccaugggcGCCGCCGUCg -3'
miRNA:   3'- aC-UUGGAGa----GC-CCG-UGC---------------UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 21303 0.66 0.937282
Target:  5'- cGAACaUC-CGuGCACGACCGCC-UCg -3'
miRNA:   3'- aCUUGgAGaGCcCGUGCUGGUGGcAG- -5'
15713 5' -57.4 NC_004065.1 + 151345 0.66 0.916936
Target:  5'- aGAuacuCgCUCUCGGGCGCcgcggcgccGGCCGCUG-Cg -3'
miRNA:   3'- aCUu---G-GAGAGCCCGUG---------CUGGUGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.