miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 121301 0.67 0.893083
Target:  5'- gGAugCUCacCGGGCAgCGGCC-CCG-Ca -3'
miRNA:   3'- aCUugGAGa-GCCCGU-GCUGGuGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 47368 0.67 0.893083
Target:  5'- -aGACCguaCUCcacaguccaGCGCGGCCGCCGUCg -3'
miRNA:   3'- acUUGGa--GAGcc-------CGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 137479 0.67 0.893083
Target:  5'- gUGAACCaggUCUUcccgugccgccgGGGCACGAggaaCACCGUg -3'
miRNA:   3'- -ACUUGG---AGAG------------CCCGUGCUg---GUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 47288 0.68 0.843386
Target:  5'- cUGAGCUgcguUCUaCGuggguauaagaGGCGCGACCAgCGUCg -3'
miRNA:   3'- -ACUUGG----AGA-GC-----------CCGUGCUGGUgGCAG- -5'
15713 5' -57.4 NC_004065.1 + 67591 0.68 0.858555
Target:  5'- gGGGCCUCggcUCGagauaGCGCGGCguCCGUCg -3'
miRNA:   3'- aCUUGGAG---AGCc----CGUGCUGguGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 169445 0.68 0.851063
Target:  5'- aGAACa--UCGGGCGCc-CCGCCGUg -3'
miRNA:   3'- aCUUGgagAGCCCGUGcuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 176846 0.68 0.825069
Target:  5'- uUGGACUUUuucuuguucuugggUCGGGCggACGGCUcCCGUCg -3'
miRNA:   3'- -ACUUGGAG--------------AGCCCG--UGCUGGuGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 63416 0.68 0.865138
Target:  5'- aUGAGCUUCUUGGGggguuacacccagUGCGACgCGCCGa- -3'
miRNA:   3'- -ACUUGGAGAGCCC-------------GUGCUG-GUGGCag -5'
15713 5' -57.4 NC_004065.1 + 199145 0.68 0.835533
Target:  5'- cGAcGCC-CUgCGGGCGCucGAacCCGCCGUCg -3'
miRNA:   3'- aCU-UGGaGA-GCCCGUG--CU--GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 43426 0.68 0.835533
Target:  5'- gGggUC-CUCGGGaguaGCGuacggagcGCCGCCGUCc -3'
miRNA:   3'- aCuuGGaGAGCCCg---UGC--------UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 25005 0.68 0.858555
Target:  5'- gUGGGCgUCcgUGGGCGCGGCaagggGCCGUg -3'
miRNA:   3'- -ACUUGgAGa-GCCCGUGCUGg----UGGCAg -5'
15713 5' -57.4 NC_004065.1 + 126163 0.68 0.851063
Target:  5'- --cGCCaugaUCgcgUGGuGCGCGAUCGCCGUCa -3'
miRNA:   3'- acuUGG----AGa--GCC-CGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 194441 0.68 0.851063
Target:  5'- cGGgcGCCUCggucgaagcggUUGGGCACGgcggcGCCGCCGcUCa -3'
miRNA:   3'- aCU--UGGAG-----------AGCCCGUGC-----UGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 59655 0.68 0.851063
Target:  5'- -cAGCCggUCUCGGaGCACG-CCACCucGUCc -3'
miRNA:   3'- acUUGG--AGAGCC-CGUGCuGGUGG--CAG- -5'
15713 5' -57.4 NC_004065.1 + 20135 0.68 0.851063
Target:  5'- cGAACCUCucguUCGGGUAcCGugcCCAgUGUCa -3'
miRNA:   3'- aCUUGGAG----AGCCCGU-GCu--GGUgGCAG- -5'
15713 5' -57.4 NC_004065.1 + 97632 0.68 0.851063
Target:  5'- aGAGCCgccCUUGcGGCACGGagaCGCCGg- -3'
miRNA:   3'- aCUUGGa--GAGC-CCGUGCUg--GUGGCag -5'
15713 5' -57.4 NC_004065.1 + 229613 0.68 0.843386
Target:  5'- --cACCcCcCGGGCGCGGaaaaaCACCGUCu -3'
miRNA:   3'- acuUGGaGaGCCCGUGCUg----GUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 31106 0.68 0.843386
Target:  5'- aGggUggagCGGGCAgGcACCACCGUCa -3'
miRNA:   3'- aCuuGgagaGCCCGUgC-UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 18124 0.68 0.843386
Target:  5'- aGAACCUC-CGGGCcCG-CCGCgGg- -3'
miRNA:   3'- aCUUGGAGaGCCCGuGCuGGUGgCag -5'
15713 5' -57.4 NC_004065.1 + 100960 0.68 0.827508
Target:  5'- gGAACUUCUCccGGCAC-AgCGCCGUCc -3'
miRNA:   3'- aCUUGGAGAGc-CCGUGcUgGUGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.