Results 101 - 120 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 85461 | 0.7 | 0.739455 |
Target: 5'- gUGAACCugacccagcugaUCUUGGGCuucGCGACCAUgGUg -3' miRNA: 3'- -ACUUGG------------AGAGCCCG---UGCUGGUGgCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 138825 | 0.71 | 0.690711 |
Target: 5'- aGAACCcuaccugUUUCGGGCGCGACCGagaGUg -3' miRNA: 3'- aCUUGG-------AGAGCCCGUGCUGGUgg-CAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 79728 | 0.71 | 0.720548 |
Target: 5'- cGAguGCUUCUCGGGCaaGCGGCgGCUGa- -3' miRNA: 3'- aCU--UGGAGAGCCCG--UGCUGgUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 61038 | 0.71 | 0.691682 |
Target: 5'- -uAACCUCUCGGaCACGcUCGCCGUg -3' miRNA: 3'- acUUGGAGAGCCcGUGCuGGUGGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 50862 | 0.72 | 0.638823 |
Target: 5'- gGGGCCUCUgacggagagaucgaCGGGCACGGgcgagacgguacuCCACCGcCa -3' miRNA: 3'- aCUUGGAGA--------------GCCCGUGCU-------------GGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 109528 | 0.72 | 0.652587 |
Target: 5'- aGGucACCgUCUacccCGGGCACGA-CACCGUCg -3' miRNA: 3'- aCU--UGG-AGA----GCCCGUGCUgGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 50258 | 0.72 | 0.631935 |
Target: 5'- gGAGCaCUCgaagacgcccgauUCGGGCcccgaGACCGCCGUCc -3' miRNA: 3'- aCUUG-GAG-------------AGCCCGug---CUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 33392 | 0.72 | 0.623081 |
Target: 5'- gGAGCCUCUCGaGGCGCucGCC-CCGg- -3' miRNA: 3'- aCUUGGAGAGC-CCGUGc-UGGuGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 35487 | 0.72 | 0.613249 |
Target: 5'- gUGAcgACgUUCaCGGGCACGACCGgCGUCu -3' miRNA: 3'- -ACU--UG-GAGaGCCCGUGCUGGUgGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 224791 | 0.72 | 0.652587 |
Target: 5'- --cACCUgagCGGGCggcagcacggucACGACCGCCGUCu -3' miRNA: 3'- acuUGGAga-GCCCG------------UGCUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 59714 | 0.72 | 0.662403 |
Target: 5'- cGAGCggCcgCGGcGCACGGCgACCGUCg -3' miRNA: 3'- aCUUGgaGa-GCC-CGUGCUGgUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 99091 | 0.72 | 0.652587 |
Target: 5'- cGAGaagUCUCGGGCGCGGCCGuauaaaccCCGUUu -3' miRNA: 3'- aCUUgg-AGAGCCCGUGCUGGU--------GGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 105554 | 0.72 | 0.632919 |
Target: 5'- cUGGACCcggCgcaGcGGCACGGCgCGCCGUCg -3' miRNA: 3'- -ACUUGGa--Gag-C-CCGUGCUG-GUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 162139 | 0.72 | 0.641774 |
Target: 5'- cGGACagacgCUCGGGCAaccugauCGGCCGCCGg- -3' miRNA: 3'- aCUUGga---GAGCCCGU-------GCUGGUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 124518 | 0.73 | 0.593631 |
Target: 5'- cUGcGCgUUCUCGGGCACGugCGCCa-- -3' miRNA: 3'- -ACuUG-GAGAGCCCGUGCugGUGGcag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 6916 | 0.74 | 0.554754 |
Target: 5'- -cGGCUUCagcugCGGGCACGGCCucggcguccGCCGUCg -3' miRNA: 3'- acUUGGAGa----GCCCGUGCUGG---------UGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 200439 | 0.74 | 0.545144 |
Target: 5'- aGGACCg--CGGucacCGCGGCCGCCGUCa -3' miRNA: 3'- aCUUGGagaGCCc---GUGCUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 16805 | 0.74 | 0.526092 |
Target: 5'- cGAACCa-UCGucCACGGCCGCCGUCg -3' miRNA: 3'- aCUUGGagAGCccGUGCUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 187373 | 0.76 | 0.43532 |
Target: 5'- -cAAUCUCUCGGGgggaucCACGGuCCACCGUCu -3' miRNA: 3'- acUUGGAGAGCCC------GUGCU-GGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 180307 | 0.78 | 0.354273 |
Target: 5'- cGAACuCUCgcCGGGCAUcauggagagGACCGCCGUCa -3' miRNA: 3'- aCUUG-GAGa-GCCCGUG---------CUGGUGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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