Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 85461 | 0.7 | 0.739455 |
Target: 5'- gUGAACCugacccagcugaUCUUGGGCuucGCGACCAUgGUg -3' miRNA: 3'- -ACUUGG------------AGAGCCCG---UGCUGGUGgCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 207950 | 0.7 | 0.776166 |
Target: 5'- gGAGCgCg--CGGGUugGGCCGCCG-Cg -3' miRNA: 3'- aCUUG-GagaGCCCGugCUGGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 93489 | 0.7 | 0.776166 |
Target: 5'- gUGGcgGCCUCUuCGGGCGUGACCACacUCg -3' miRNA: 3'- -ACU--UGGAGA-GCCCGUGCUGGUGgcAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 90121 | 0.7 | 0.770768 |
Target: 5'- -cGACCcCUCGGGggaugcgaucacccuCACccgGACCACCGUCa -3' miRNA: 3'- acUUGGaGAGCCC---------------GUG---CUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 163739 | 0.7 | 0.748783 |
Target: 5'- cGuguCCgugaaCUCGGGCAgGGCCACCaucGUCa -3' miRNA: 3'- aCuu-GGa----GAGCCCGUgCUGGUGG---CAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 60895 | 0.7 | 0.758016 |
Target: 5'- cGAGCgUCUCGGGaacugcuggcCGCGGCCcgcguCUGUCa -3' miRNA: 3'- aCUUGgAGAGCCC----------GUGCUGGu----GGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 81874 | 0.7 | 0.776166 |
Target: 5'- aGAGauggUUCUCGGGCACGGCgGgCGUg -3' miRNA: 3'- aCUUg---GAGAGCCCGUGCUGgUgGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 147737 | 0.7 | 0.758016 |
Target: 5'- cGGGCC-CUCaGGGagacCACGGCCaacACCGUCg -3' miRNA: 3'- aCUUGGaGAG-CCC----GUGCUGG---UGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 34186 | 0.7 | 0.748783 |
Target: 5'- cGGAagaCUCggaCGGGCuCGAgCGCCGUCu -3' miRNA: 3'- aCUUg--GAGa--GCCCGuGCUgGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 162637 | 0.7 | 0.758016 |
Target: 5'- cGAucaccCCUCUCGuGuGCACG-CCgACCGUCa -3' miRNA: 3'- aCUu----GGAGAGC-C-CGUGCuGG-UGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 112678 | 0.69 | 0.785066 |
Target: 5'- cUGAACgC-CUCGGGCGa---CACCGUCa -3' miRNA: 3'- -ACUUG-GaGAGCCCGUgcugGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 154774 | 0.69 | 0.785066 |
Target: 5'- gUGGAUaucaUUCUCGGGCGCGAauGCgGUCg -3' miRNA: 3'- -ACUUG----GAGAGCCCGUGCUggUGgCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 120213 | 0.69 | 0.802478 |
Target: 5'- cGAuCUUCUUGGGCG-GACCGCgCGUg -3' miRNA: 3'- aCUuGGAGAGCCCGUgCUGGUG-GCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 198913 | 0.69 | 0.802478 |
Target: 5'- -cAGCCUCUCGaucGCGCG-CCGCCGg- -3' miRNA: 3'- acUUGGAGAGCc--CGUGCuGGUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 196023 | 0.69 | 0.808441 |
Target: 5'- aGcACgCUCUCGGGCcaccacgugcaugaGCGcgaGCCAUCGUCg -3' miRNA: 3'- aCuUG-GAGAGCCCG--------------UGC---UGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 11392 | 0.69 | 0.81932 |
Target: 5'- cGAacuACCUCgacgagaCGGGCAUGAUCuCCGUUc -3' miRNA: 3'- aCU---UGGAGa------GCCCGUGCUGGuGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 194711 | 0.69 | 0.810974 |
Target: 5'- gGAcgGCgUUUCGGGCugGACCACa--- -3' miRNA: 3'- aCU--UGgAGAGCCCGugCUGGUGgcag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 2986 | 0.69 | 0.802478 |
Target: 5'- -cGACCUCUCGGcGCcgACGAaCCAUCGg- -3' miRNA: 3'- acUUGGAGAGCC-CG--UGCU-GGUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 94606 | 0.69 | 0.788591 |
Target: 5'- cGAACCagcgguccgaucggcUCcugacggggUCGGGCGCGGCCggcgcgucACCGUCc -3' miRNA: 3'- aCUUGG---------------AG---------AGCCCGUGCUGG--------UGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 25005 | 0.68 | 0.858555 |
Target: 5'- gUGGGCgUCcgUGGGCGCGGCaagggGCCGUg -3' miRNA: 3'- -ACUUGgAGa-GCCCGUGCUGg----UGGCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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