Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 199541 | 0.67 | 0.872968 |
Target: 5'- cGGgcGCCUCcagcCGGGCGCGccccaucguGCCGCgGUCc -3' miRNA: 3'- aCU--UGGAGa---GCCCGUGC---------UGGUGgCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 121301 | 0.67 | 0.893083 |
Target: 5'- gGAugCUCacCGGGCAgCGGCC-CCG-Ca -3' miRNA: 3'- aCUugGAGa-GCCCGU-GCUGGuGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 223489 | 0.67 | 0.893083 |
Target: 5'- -aGACCgUCUCGGGaccaGCaGAUCGCCGgUCa -3' miRNA: 3'- acUUGG-AGAGCCCg---UG-CUGGUGGC-AG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 47368 | 0.67 | 0.893083 |
Target: 5'- -aGACCguaCUCcacaguccaGCGCGGCCGCCGUCg -3' miRNA: 3'- acUUGGa--GAGcc-------CGUGCUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 137479 | 0.67 | 0.893083 |
Target: 5'- gUGAACCaggUCUUcccgugccgccgGGGCACGAggaaCACCGUg -3' miRNA: 3'- -ACUUGG---AGAG------------CCCGUGCUg---GUGGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 66621 | 0.67 | 0.893083 |
Target: 5'- gGAGCCg--CGGGCuGCGGCgCugCGUg -3' miRNA: 3'- aCUUGGagaGCCCG-UGCUG-GugGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 109905 | 0.67 | 0.886584 |
Target: 5'- gGggUCccggCUCGuccGcCGCGGCCGCCGUCg -3' miRNA: 3'- aCuuGGa---GAGCc--C-GUGCUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 167640 | 0.67 | 0.89937 |
Target: 5'- gGAugCUCgucggCGGG-ACGGCCguACCGUg -3' miRNA: 3'- aCUugGAGa----GCCCgUGCUGG--UGGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 49541 | 0.67 | 0.905443 |
Target: 5'- -cGACCaUCUUGGGCAgggGAUCGCCGg- -3' miRNA: 3'- acUUGG-AGAGCCCGUg--CUGGUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 198178 | 0.67 | 0.905443 |
Target: 5'- cGAACUUgUCGGcCACGAUCACgugGUCg -3' miRNA: 3'- aCUUGGAgAGCCcGUGCUGGUGg--CAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 41142 | 0.67 | 0.89937 |
Target: 5'- gUGAGCUUCUCGuGGUACcugagccagagGACCAucUCGUUg -3' miRNA: 3'- -ACUUGGAGAGC-CCGUG-----------CUGGU--GGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 144509 | 0.67 | 0.872968 |
Target: 5'- -cGACU--UCGGGCGCGGCgACCGg- -3' miRNA: 3'- acUUGGagAGCCCGUGCUGgUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 207663 | 0.67 | 0.879878 |
Target: 5'- cGAACCgcaucUCUCGGGUggGACUACaucacuggacggCGUCu -3' miRNA: 3'- aCUUGG-----AGAGCCCGugCUGGUG------------GCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 78853 | 0.67 | 0.872266 |
Target: 5'- cUGGACCUCUcccccuaCGGGaACGACCAggUGUCg -3' miRNA: 3'- -ACUUGGAGA-------GCCCgUGCUGGUg-GCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 169320 | 0.67 | 0.886584 |
Target: 5'- gGAGCgUgaCGGGCGCagcgccAUCACCGUCu -3' miRNA: 3'- aCUUGgAgaGCCCGUGc-----UGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 135191 | 0.67 | 0.872968 |
Target: 5'- gGGACUg-UUGGGCGCcGCCGCCGa- -3' miRNA: 3'- aCUUGGagAGCCCGUGcUGGUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 133901 | 0.67 | 0.905443 |
Target: 5'- cGGGCCaccCUCGcGGaGCGACCGCC-UCg -3' miRNA: 3'- aCUUGGa--GAGC-CCgUGCUGGUGGcAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 116512 | 0.67 | 0.905443 |
Target: 5'- cGAucUUUCUCGGGCAgaaGACCuuguaGCCGUUg -3' miRNA: 3'- aCUu-GGAGAGCCCGUg--CUGG-----UGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 109952 | 0.67 | 0.905443 |
Target: 5'- aUGAgucGCCUCUCcGGCGCGGucuCCGacgaCGUCc -3' miRNA: 3'- -ACU---UGGAGAGcCCGUGCU---GGUg---GCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 90958 | 0.67 | 0.886584 |
Target: 5'- cGGGCCagaCGGGCACG-CUGCgGUCg -3' miRNA: 3'- aCUUGGagaGCCCGUGCuGGUGgCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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