Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 49541 | 0.67 | 0.905443 |
Target: 5'- -cGACCaUCUUGGGCAgggGAUCGCCGg- -3' miRNA: 3'- acUUGG-AGAGCCCGUg--CUGGUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 167640 | 0.67 | 0.89937 |
Target: 5'- gGAugCUCgucggCGGG-ACGGCCguACCGUg -3' miRNA: 3'- aCUugGAGa----GCCCgUGCUGG--UGGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 139580 | 0.67 | 0.89937 |
Target: 5'- aGAGCa-CUCGGGagguggccgcgGCGAUCGCCGUUg -3' miRNA: 3'- aCUUGgaGAGCCCg----------UGCUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 223489 | 0.67 | 0.893083 |
Target: 5'- -aGACCgUCUCGGGaccaGCaGAUCGCCGgUCa -3' miRNA: 3'- acUUGG-AGAGCCCg---UG-CUGGUGGC-AG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 41142 | 0.67 | 0.89937 |
Target: 5'- gUGAGCUUCUCGuGGUACcugagccagagGACCAucUCGUUg -3' miRNA: 3'- -ACUUGGAGAGC-CCGUG-----------CUGGU--GGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 127967 | 0.66 | 0.911299 |
Target: 5'- aGAugCUCuUCGGcGCuaacgccCGGCCGCCG-Cg -3' miRNA: 3'- aCUugGAG-AGCC-CGu------GCUGGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 194879 | 0.66 | 0.91358 |
Target: 5'- -uGACCagggUCUUGGGCuucggcaucgagaccACGgcGCCGCCGUCu -3' miRNA: 3'- acUUGG----AGAGCCCG---------------UGC--UGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 88360 | 0.66 | 0.911299 |
Target: 5'- gGGACCgcUCUCGuccgcggccgcGGCACcGCCACCGcCc -3' miRNA: 3'- aCUUGG--AGAGC-----------CCGUGcUGGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 210950 | 0.66 | 0.937745 |
Target: 5'- cGAACCUgggcgcggucuccucCUCgucgucacagauguGGGcCACcGCCGCCGUCg -3' miRNA: 3'- aCUUGGA---------------GAG--------------CCC-GUGcUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 74662 | 0.66 | 0.916936 |
Target: 5'- cGGACCg--C-GGCGCGuCCGCCGUa -3' miRNA: 3'- aCUUGGagaGcCCGUGCuGGUGGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 169554 | 0.66 | 0.916936 |
Target: 5'- --cGCCgUCUCGGuuucuGCGCGcuguuGCCGCUGUCg -3' miRNA: 3'- acuUGG-AGAGCC-----CGUGC-----UGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 195691 | 0.66 | 0.916936 |
Target: 5'- gGcuCCUCUCGucCACG-CCGCCGUa -3' miRNA: 3'- aCuuGGAGAGCccGUGCuGGUGGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 21303 | 0.66 | 0.937282 |
Target: 5'- cGAACaUC-CGuGCACGACCGCC-UCg -3' miRNA: 3'- aCUUGgAGaGCcCGUGCUGGUGGcAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 229488 | 0.66 | 0.937282 |
Target: 5'- gGGGCgCUCgcacaggGGGCGCG-CCACCG-Cg -3' miRNA: 3'- aCUUG-GAGag-----CCCGUGCuGGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 198791 | 0.66 | 0.937282 |
Target: 5'- aGGGCCUCUUcgcaacacaGGaGCGCGuucGCCcuguCCGUCa -3' miRNA: 3'- aCUUGGAGAG---------CC-CGUGC---UGGu---GGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 163371 | 0.66 | 0.932526 |
Target: 5'- cGAACaCUCgcCGGGCGC--CCACCG-Cg -3' miRNA: 3'- aCUUG-GAGa-GCCCGUGcuGGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 127406 | 0.66 | 0.932526 |
Target: 5'- --cGCCUCUCccaGGC-CG-UCACCGUCg -3' miRNA: 3'- acuUGGAGAGc--CCGuGCuGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 107592 | 0.66 | 0.927551 |
Target: 5'- aGAACUUCU---GCGCGAggcUCACCGUCa -3' miRNA: 3'- aCUUGGAGAgccCGUGCU---GGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 197672 | 0.66 | 0.922354 |
Target: 5'- gGGACC-CUCGccGUAcCGACCGCCGcUCg -3' miRNA: 3'- aCUUGGaGAGCc-CGU-GCUGGUGGC-AG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 90902 | 0.66 | 0.916936 |
Target: 5'- cUGAACgCgagCUCGGaGCA-GACCgcgucgACCGUCa -3' miRNA: 3'- -ACUUG-Ga--GAGCC-CGUgCUGG------UGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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