miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 176572 1.1 0.003018
Target:  5'- uUGAACCUCUCGGGCACGACCACCGUCg -3'
miRNA:   3'- -ACUUGGAGAGCCCGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 180307 0.78 0.354273
Target:  5'- cGAACuCUCgcCGGGCAUcauggagagGACCGCCGUCa -3'
miRNA:   3'- aCUUG-GAGa-GCCCGUG---------CUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 187373 0.76 0.43532
Target:  5'- -cAAUCUCUCGGGgggaucCACGGuCCACCGUCu -3'
miRNA:   3'- acUUGGAGAGCCC------GUGCU-GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 16805 0.74 0.526092
Target:  5'- cGAACCa-UCGucCACGGCCGCCGUCg -3'
miRNA:   3'- aCUUGGagAGCccGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 200439 0.74 0.545144
Target:  5'- aGGACCg--CGGucacCGCGGCCGCCGUCa -3'
miRNA:   3'- aCUUGGagaGCCc---GUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 6916 0.74 0.554754
Target:  5'- -cGGCUUCagcugCGGGCACGGCCucggcguccGCCGUCg -3'
miRNA:   3'- acUUGGAGa----GCCCGUGCUGG---------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 124518 0.73 0.593631
Target:  5'- cUGcGCgUUCUCGGGCACGugCGCCa-- -3'
miRNA:   3'- -ACuUG-GAGAGCCCGUGCugGUGGcag -5'
15713 5' -57.4 NC_004065.1 + 35487 0.72 0.613249
Target:  5'- gUGAcgACgUUCaCGGGCACGACCGgCGUCu -3'
miRNA:   3'- -ACU--UG-GAGaGCCCGUGCUGGUgGCAG- -5'
15713 5' -57.4 NC_004065.1 + 33392 0.72 0.623081
Target:  5'- gGAGCCUCUCGaGGCGCucGCC-CCGg- -3'
miRNA:   3'- aCUUGGAGAGC-CCGUGc-UGGuGGCag -5'
15713 5' -57.4 NC_004065.1 + 50258 0.72 0.631935
Target:  5'- gGAGCaCUCgaagacgcccgauUCGGGCcccgaGACCGCCGUCc -3'
miRNA:   3'- aCUUG-GAG-------------AGCCCGug---CUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 105554 0.72 0.632919
Target:  5'- cUGGACCcggCgcaGcGGCACGGCgCGCCGUCg -3'
miRNA:   3'- -ACUUGGa--Gag-C-CCGUGCUG-GUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 50862 0.72 0.638823
Target:  5'- gGGGCCUCUgacggagagaucgaCGGGCACGGgcgagacgguacuCCACCGcCa -3'
miRNA:   3'- aCUUGGAGA--------------GCCCGUGCU-------------GGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 162139 0.72 0.641774
Target:  5'- cGGACagacgCUCGGGCAaccugauCGGCCGCCGg- -3'
miRNA:   3'- aCUUGga---GAGCCCGU-------GCUGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 99091 0.72 0.652587
Target:  5'- cGAGaagUCUCGGGCGCGGCCGuauaaaccCCGUUu -3'
miRNA:   3'- aCUUgg-AGAGCCCGUGCUGGU--------GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 109528 0.72 0.652587
Target:  5'- aGGucACCgUCUacccCGGGCACGA-CACCGUCg -3'
miRNA:   3'- aCU--UGG-AGA----GCCCGUGCUgGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 224791 0.72 0.652587
Target:  5'- --cACCUgagCGGGCggcagcacggucACGACCGCCGUCu -3'
miRNA:   3'- acuUGGAga-GCCCG------------UGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 59714 0.72 0.662403
Target:  5'- cGAGCggCcgCGGcGCACGGCgACCGUCg -3'
miRNA:   3'- aCUUGgaGa-GCC-CGUGCUGgUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 138825 0.71 0.690711
Target:  5'- aGAACCcuaccugUUUCGGGCGCGACCGagaGUg -3'
miRNA:   3'- aCUUGG-------AGAGCCCGUGCUGGUgg-CAg -5'
15713 5' -57.4 NC_004065.1 + 61038 0.71 0.691682
Target:  5'- -uAACCUCUCGGaCACGcUCGCCGUg -3'
miRNA:   3'- acUUGGAGAGCCcGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 79728 0.71 0.720548
Target:  5'- cGAguGCUUCUCGGGCaaGCGGCgGCUGa- -3'
miRNA:   3'- aCU--UGGAGAGCCCG--UGCUGgUGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.