Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 198178 | 0.67 | 0.905443 |
Target: 5'- cGAACUUgUCGGcCACGAUCACgugGUCg -3' miRNA: 3'- aCUUGGAgAGCCcGUGCUGGUGg--CAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 116512 | 0.67 | 0.905443 |
Target: 5'- cGAucUUUCUCGGGCAgaaGACCuuguaGCCGUUg -3' miRNA: 3'- aCUu-GGAGAGCCCGUg--CUGG-----UGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 133901 | 0.67 | 0.905443 |
Target: 5'- cGGGCCaccCUCGcGGaGCGACCGCC-UCg -3' miRNA: 3'- aCUUGGa--GAGC-CCgUGCUGGUGGcAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 109952 | 0.67 | 0.905443 |
Target: 5'- aUGAgucGCCUCUCcGGCGCGGucuCCGacgaCGUCc -3' miRNA: 3'- -ACU---UGGAGAGcCCGUGCU---GGUg---GCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 154671 | 0.67 | 0.907811 |
Target: 5'- cUGcuCCUCUCGGGCaccgugaggacgaacGCGACggaCGCCG-Cg -3' miRNA: 3'- -ACuuGGAGAGCCCG---------------UGCUG---GUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 110376 | 0.66 | 0.909565 |
Target: 5'- gGGACCUCUCGcgcaGGCcguucgaacacgccACGGCCGacggCGUCu -3' miRNA: 3'- aCUUGGAGAGC----CCG--------------UGCUGGUg---GCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 88360 | 0.66 | 0.911299 |
Target: 5'- gGGACCgcUCUCGuccgcggccgcGGCACcGCCACCGcCc -3' miRNA: 3'- aCUUGG--AGAGC-----------CCGUGcUGGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 127967 | 0.66 | 0.911299 |
Target: 5'- aGAugCUCuUCGGcGCuaacgccCGGCCGCCG-Cg -3' miRNA: 3'- aCUugGAG-AGCC-CGu------GCUGGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 57032 | 0.66 | 0.911299 |
Target: 5'- cGAGCCauggCUCGucgucGGCACGACgGgcaaggccCCGUCa -3' miRNA: 3'- aCUUGGa---GAGC-----CCGUGCUGgU--------GGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 111903 | 0.66 | 0.91358 |
Target: 5'- cGcAACCUCguccgCGcGGCgACGagagacgccaugggcGCCGCCGUCg -3' miRNA: 3'- aC-UUGGAGa----GC-CCG-UGC---------------UGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 194879 | 0.66 | 0.91358 |
Target: 5'- -uGACCagggUCUUGGGCuucggcaucgagaccACGgcGCCGCCGUCu -3' miRNA: 3'- acUUGG----AGAGCCCG---------------UGC--UGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 7348 | 0.66 | 0.916936 |
Target: 5'- gGAGCCgUUCGGaaAgGACUACUGUCg -3' miRNA: 3'- aCUUGGaGAGCCcgUgCUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 18289 | 0.66 | 0.916936 |
Target: 5'- aGAucACCUCgUCGagcGGCugGACgGuCCGUCu -3' miRNA: 3'- aCU--UGGAG-AGC---CCGugCUGgU-GGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 151345 | 0.66 | 0.916936 |
Target: 5'- aGAuacuCgCUCUCGGGCGCcgcggcgccGGCCGCUG-Cg -3' miRNA: 3'- aCUu---G-GAGAGCCCGUG---------CUGGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 74662 | 0.66 | 0.916936 |
Target: 5'- cGGACCg--C-GGCGCGuCCGCCGUa -3' miRNA: 3'- aCUUGGagaGcCCGUGCuGGUGGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 169554 | 0.66 | 0.916936 |
Target: 5'- --cGCCgUCUCGGuuucuGCGCGcuguuGCCGCUGUCg -3' miRNA: 3'- acuUGG-AGAGCC-----CGUGC-----UGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 195691 | 0.66 | 0.916936 |
Target: 5'- gGcuCCUCUCGucCACG-CCGCCGUa -3' miRNA: 3'- aCuuGGAGAGCccGUGCuGGUGGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 61435 | 0.66 | 0.916936 |
Target: 5'- --uGCCUCcgcagcuagcacUCGGGCcgagACGcCCGCUGUCg -3' miRNA: 3'- acuUGGAG------------AGCCCG----UGCuGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 143738 | 0.66 | 0.916936 |
Target: 5'- cGAGCUgcugccccagCUCGGGCAgcaGAuCUACCGUUu -3' miRNA: 3'- aCUUGGa---------GAGCCCGUg--CU-GGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 90902 | 0.66 | 0.916936 |
Target: 5'- cUGAACgCgagCUCGGaGCA-GACCgcgucgACCGUCa -3' miRNA: 3'- -ACUUG-Ga--GAGCC-CGUgCUGG------UGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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