miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 49541 0.67 0.905443
Target:  5'- -cGACCaUCUUGGGCAgggGAUCGCCGg- -3'
miRNA:   3'- acUUGG-AGAGCCCGUg--CUGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 109952 0.67 0.905443
Target:  5'- aUGAgucGCCUCUCcGGCGCGGucuCCGacgaCGUCc -3'
miRNA:   3'- -ACU---UGGAGAGcCCGUGCU---GGUg---GCAG- -5'
15713 5' -57.4 NC_004065.1 + 109613 0.67 0.89937
Target:  5'- -cGACCcC-CGGGcCGCGgugcccACCACCGUCg -3'
miRNA:   3'- acUUGGaGaGCCC-GUGC------UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 27282 0.67 0.89937
Target:  5'- cGGACggcgCUCGGGaCACGAgCCgaaacgGCCGUCc -3'
miRNA:   3'- aCUUGga--GAGCCC-GUGCU-GG------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 167640 0.67 0.89937
Target:  5'- gGAugCUCgucggCGGG-ACGGCCguACCGUg -3'
miRNA:   3'- aCUugGAGa----GCCCgUGCUGG--UGGCAg -5'
15713 5' -57.4 NC_004065.1 + 139580 0.67 0.89937
Target:  5'- aGAGCa-CUCGGGagguggccgcgGCGAUCGCCGUUg -3'
miRNA:   3'- aCUUGgaGAGCCCg----------UGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 41142 0.67 0.89937
Target:  5'- gUGAGCUUCUCGuGGUACcugagccagagGACCAucUCGUUg -3'
miRNA:   3'- -ACUUGGAGAGC-CCGUG-----------CUGGU--GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 209770 0.67 0.893083
Target:  5'- cGAGCgUCUUGGcaaGCACcACUGCUGUCg -3'
miRNA:   3'- aCUUGgAGAGCC---CGUGcUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 66621 0.67 0.893083
Target:  5'- gGAGCCg--CGGGCuGCGGCgCugCGUg -3'
miRNA:   3'- aCUUGGagaGCCCG-UGCUG-GugGCAg -5'
15713 5' -57.4 NC_004065.1 + 137479 0.67 0.893083
Target:  5'- gUGAACCaggUCUUcccgugccgccgGGGCACGAggaaCACCGUg -3'
miRNA:   3'- -ACUUGG---AGAG------------CCCGUGCUg---GUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 47368 0.67 0.893083
Target:  5'- -aGACCguaCUCcacaguccaGCGCGGCCGCCGUCg -3'
miRNA:   3'- acUUGGa--GAGcc-------CGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 121301 0.67 0.893083
Target:  5'- gGAugCUCacCGGGCAgCGGCC-CCG-Ca -3'
miRNA:   3'- aCUugGAGa-GCCCGU-GCUGGuGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 156512 0.67 0.893083
Target:  5'- gGAugCUCUCGauCGCuaaaaaaGCCACCGUCa -3'
miRNA:   3'- aCUugGAGAGCccGUGc------UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 223489 0.67 0.893083
Target:  5'- -aGACCgUCUCGGGaccaGCaGAUCGCCGgUCa -3'
miRNA:   3'- acUUGG-AGAGCCCg---UG-CUGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 90958 0.67 0.886584
Target:  5'- cGGGCCagaCGGGCACG-CUGCgGUCg -3'
miRNA:   3'- aCUUGGagaGCCCGUGCuGGUGgCAG- -5'
15713 5' -57.4 NC_004065.1 + 175894 0.67 0.886584
Target:  5'- cGAACCUUUgaUGGGagACGAUgAUCGUCg -3'
miRNA:   3'- aCUUGGAGA--GCCCg-UGCUGgUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 169320 0.67 0.886584
Target:  5'- gGAGCgUgaCGGGCGCagcgccAUCACCGUCu -3'
miRNA:   3'- aCUUGgAgaGCCCGUGc-----UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 109905 0.67 0.886584
Target:  5'- gGggUCccggCUCGuccGcCGCGGCCGCCGUCg -3'
miRNA:   3'- aCuuGGa---GAGCc--C-GUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 207663 0.67 0.879878
Target:  5'- cGAACCgcaucUCUCGGGUggGACUACaucacuggacggCGUCu -3'
miRNA:   3'- aCUUGG-----AGAGCCCGugCUGGUG------------GCAG- -5'
15713 5' -57.4 NC_004065.1 + 199541 0.67 0.872968
Target:  5'- cGGgcGCCUCcagcCGGGCGCGccccaucguGCCGCgGUCc -3'
miRNA:   3'- aCU--UGGAGa---GCCCGUGC---------UGGUGgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.