miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 2986 0.69 0.802478
Target:  5'- -cGACCUCUCGGcGCcgACGAaCCAUCGg- -3'
miRNA:   3'- acUUGGAGAGCC-CG--UGCU-GGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 6916 0.74 0.554754
Target:  5'- -cGGCUUCagcugCGGGCACGGCCucggcguccGCCGUCg -3'
miRNA:   3'- acUUGGAGa----GCCCGUGCUGG---------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 7348 0.66 0.916936
Target:  5'- gGAGCCgUUCGGaaAgGACUACUGUCg -3'
miRNA:   3'- aCUUGGaGAGCCcgUgCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 11392 0.69 0.81932
Target:  5'- cGAacuACCUCgacgagaCGGGCAUGAUCuCCGUUc -3'
miRNA:   3'- aCU---UGGAGa------GCCCGUGCUGGuGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 16805 0.74 0.526092
Target:  5'- cGAACCa-UCGucCACGGCCGCCGUCg -3'
miRNA:   3'- aCUUGGagAGCccGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 18124 0.68 0.843386
Target:  5'- aGAACCUC-CGGGCcCG-CCGCgGg- -3'
miRNA:   3'- aCUUGGAGaGCCCGuGCuGGUGgCag -5'
15713 5' -57.4 NC_004065.1 + 18289 0.66 0.916936
Target:  5'- aGAucACCUCgUCGagcGGCugGACgGuCCGUCu -3'
miRNA:   3'- aCU--UGGAG-AGC---CCGugCUGgU-GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 20135 0.68 0.851063
Target:  5'- cGAACCUCucguUCGGGUAcCGugcCCAgUGUCa -3'
miRNA:   3'- aCUUGGAG----AGCCCGU-GCu--GGUgGCAG- -5'
15713 5' -57.4 NC_004065.1 + 21303 0.66 0.937282
Target:  5'- cGAACaUC-CGuGCACGACCGCC-UCg -3'
miRNA:   3'- aCUUGgAGaGCcCGUGCUGGUGGcAG- -5'
15713 5' -57.4 NC_004065.1 + 25005 0.68 0.858555
Target:  5'- gUGGGCgUCcgUGGGCGCGGCaagggGCCGUg -3'
miRNA:   3'- -ACUUGgAGa-GCCCGUGCUGg----UGGCAg -5'
15713 5' -57.4 NC_004065.1 + 27282 0.67 0.89937
Target:  5'- cGGACggcgCUCGGGaCACGAgCCgaaacgGCCGUCc -3'
miRNA:   3'- aCUUGga--GAGCCC-GUGCU-GG------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 29694 0.68 0.834738
Target:  5'- cUGAGCCUCggcgccccgaCGGGCugGuaccucuGCCugCGUUc -3'
miRNA:   3'- -ACUUGGAGa---------GCCCGugC-------UGGugGCAG- -5'
15713 5' -57.4 NC_004065.1 + 31106 0.68 0.843386
Target:  5'- aGggUggagCGGGCAgGcACCACCGUCa -3'
miRNA:   3'- aCuuGgagaGCCCGUgC-UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 31906 0.66 0.922354
Target:  5'- cGGGCCUgaCGcGGCGCG-UCGCCGa- -3'
miRNA:   3'- aCUUGGAgaGC-CCGUGCuGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 33392 0.72 0.623081
Target:  5'- gGAGCCUCUCGaGGCGCucGCC-CCGg- -3'
miRNA:   3'- aCUUGGAGAGC-CCGUGc-UGGuGGCag -5'
15713 5' -57.4 NC_004065.1 + 34186 0.7 0.748783
Target:  5'- cGGAagaCUCggaCGGGCuCGAgCGCCGUCu -3'
miRNA:   3'- aCUUg--GAGa--GCCCGuGCUgGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 35487 0.72 0.613249
Target:  5'- gUGAcgACgUUCaCGGGCACGACCGgCGUCu -3'
miRNA:   3'- -ACU--UG-GAGaGCCCGUGCUGGUgGCAG- -5'
15713 5' -57.4 NC_004065.1 + 40260 0.66 0.922354
Target:  5'- gGggUUUCUgGGGCGCc-CCGCCGg- -3'
miRNA:   3'- aCuuGGAGAgCCCGUGcuGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 41142 0.67 0.89937
Target:  5'- gUGAGCUUCUCGuGGUACcugagccagagGACCAucUCGUUg -3'
miRNA:   3'- -ACUUGGAGAGC-CCGUG-----------CUGGU--GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 43426 0.68 0.835533
Target:  5'- gGggUC-CUCGGGaguaGCGuacggagcGCCGCCGUCc -3'
miRNA:   3'- aCuuGGaGAGCCCg---UGC--------UGGUGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.