miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 90121 0.7 0.770768
Target:  5'- -cGACCcCUCGGGggaugcgaucacccuCACccgGACCACCGUCa -3'
miRNA:   3'- acUUGGaGAGCCC---------------GUG---CUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 90902 0.66 0.916936
Target:  5'- cUGAACgCgagCUCGGaGCA-GACCgcgucgACCGUCa -3'
miRNA:   3'- -ACUUG-Ga--GAGCC-CGUgCUGG------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 90958 0.67 0.886584
Target:  5'- cGGGCCagaCGGGCACG-CUGCgGUCg -3'
miRNA:   3'- aCUUGGagaGCCCGUGCuGGUGgCAG- -5'
15713 5' -57.4 NC_004065.1 + 93489 0.7 0.776166
Target:  5'- gUGGcgGCCUCUuCGGGCGUGACCACacUCg -3'
miRNA:   3'- -ACU--UGGAGA-GCCCGUGCUGGUGgcAG- -5'
15713 5' -57.4 NC_004065.1 + 94606 0.69 0.788591
Target:  5'- cGAACCagcgguccgaucggcUCcugacggggUCGGGCGCGGCCggcgcgucACCGUCc -3'
miRNA:   3'- aCUUGG---------------AG---------AGCCCGUGCUGG--------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 97632 0.68 0.851063
Target:  5'- aGAGCCgccCUUGcGGCACGGagaCGCCGg- -3'
miRNA:   3'- aCUUGGa--GAGC-CCGUGCUg--GUGGCag -5'
15713 5' -57.4 NC_004065.1 + 99091 0.72 0.652587
Target:  5'- cGAGaagUCUCGGGCGCGGCCGuauaaaccCCGUUu -3'
miRNA:   3'- aCUUgg-AGAGCCCGUGCUGGU--------GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 100960 0.68 0.827508
Target:  5'- gGAACUUCUCccGGCAC-AgCGCCGUCc -3'
miRNA:   3'- aCUUGGAGAGc-CCGUGcUgGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 105554 0.72 0.632919
Target:  5'- cUGGACCcggCgcaGcGGCACGGCgCGCCGUCg -3'
miRNA:   3'- -ACUUGGa--Gag-C-CCGUGCUG-GUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 107592 0.66 0.927551
Target:  5'- aGAACUUCU---GCGCGAggcUCACCGUCa -3'
miRNA:   3'- aCUUGGAGAgccCGUGCU---GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 109528 0.72 0.652587
Target:  5'- aGGucACCgUCUacccCGGGCACGA-CACCGUCg -3'
miRNA:   3'- aCU--UGG-AGA----GCCCGUGCUgGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 109613 0.67 0.89937
Target:  5'- -cGACCcC-CGGGcCGCGgugcccACCACCGUCg -3'
miRNA:   3'- acUUGGaGaGCCC-GUGC------UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 109905 0.67 0.886584
Target:  5'- gGggUCccggCUCGuccGcCGCGGCCGCCGUCg -3'
miRNA:   3'- aCuuGGa---GAGCc--C-GUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 109952 0.67 0.905443
Target:  5'- aUGAgucGCCUCUCcGGCGCGGucuCCGacgaCGUCc -3'
miRNA:   3'- -ACU---UGGAGAGcCCGUGCU---GGUg---GCAG- -5'
15713 5' -57.4 NC_004065.1 + 110376 0.66 0.909565
Target:  5'- gGGACCUCUCGcgcaGGCcguucgaacacgccACGGCCGacggCGUCu -3'
miRNA:   3'- aCUUGGAGAGC----CCG--------------UGCUGGUg---GCAG- -5'
15713 5' -57.4 NC_004065.1 + 111903 0.66 0.91358
Target:  5'- cGcAACCUCguccgCGcGGCgACGagagacgccaugggcGCCGCCGUCg -3'
miRNA:   3'- aC-UUGGAGa----GC-CCG-UGC---------------UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 112678 0.69 0.785066
Target:  5'- cUGAACgC-CUCGGGCGa---CACCGUCa -3'
miRNA:   3'- -ACUUG-GaGAGCCCGUgcugGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 116512 0.67 0.905443
Target:  5'- cGAucUUUCUCGGGCAgaaGACCuuguaGCCGUUg -3'
miRNA:   3'- aCUu-GGAGAGCCCGUg--CUGG-----UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 119827 0.66 0.927551
Target:  5'- ---cCCUCUcgaCGGGCggcggcgcgucGCGGCCGCCG-Ca -3'
miRNA:   3'- acuuGGAGA---GCCCG-----------UGCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 120097 0.66 0.932526
Target:  5'- -uGACCUCcCGGGaCGCGACgGCgGcCg -3'
miRNA:   3'- acUUGGAGaGCCC-GUGCUGgUGgCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.