miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 120213 0.69 0.802478
Target:  5'- cGAuCUUCUUGGGCG-GACCGCgCGUg -3'
miRNA:   3'- aCUuGGAGAGCCCGUgCUGGUG-GCAg -5'
15713 5' -57.4 NC_004065.1 + 121301 0.67 0.893083
Target:  5'- gGAugCUCacCGGGCAgCGGCC-CCG-Ca -3'
miRNA:   3'- aCUugGAGa-GCCCGU-GCUGGuGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 124518 0.73 0.593631
Target:  5'- cUGcGCgUUCUCGGGCACGugCGCCa-- -3'
miRNA:   3'- -ACuUG-GAGAGCCCGUGCugGUGGcag -5'
15713 5' -57.4 NC_004065.1 + 126163 0.68 0.851063
Target:  5'- --cGCCaugaUCgcgUGGuGCGCGAUCGCCGUCa -3'
miRNA:   3'- acuUGG----AGa--GCC-CGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 127406 0.66 0.932526
Target:  5'- --cGCCUCUCccaGGC-CG-UCACCGUCg -3'
miRNA:   3'- acuUGGAGAGc--CCGuGCuGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 127967 0.66 0.911299
Target:  5'- aGAugCUCuUCGGcGCuaacgccCGGCCGCCG-Cg -3'
miRNA:   3'- aCUugGAG-AGCC-CGu------GCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 133356 0.66 0.937282
Target:  5'- cGAuCCUCcgUCGGGCGaGcCCGCCGa- -3'
miRNA:   3'- aCUuGGAG--AGCCCGUgCuGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 133901 0.67 0.905443
Target:  5'- cGGGCCaccCUCGcGGaGCGACCGCC-UCg -3'
miRNA:   3'- aCUUGGa--GAGC-CCgUGCUGGUGGcAG- -5'
15713 5' -57.4 NC_004065.1 + 135191 0.67 0.872968
Target:  5'- gGGACUg-UUGGGCGCcGCCGCCGa- -3'
miRNA:   3'- aCUUGGagAGCCCGUGcUGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 137479 0.67 0.893083
Target:  5'- gUGAACCaggUCUUcccgugccgccgGGGCACGAggaaCACCGUg -3'
miRNA:   3'- -ACUUGG---AGAG------------CCCGUGCUg---GUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 138825 0.71 0.690711
Target:  5'- aGAACCcuaccugUUUCGGGCGCGACCGagaGUg -3'
miRNA:   3'- aCUUGG-------AGAGCCCGUGCUGGUgg-CAg -5'
15713 5' -57.4 NC_004065.1 + 139580 0.67 0.89937
Target:  5'- aGAGCa-CUCGGGagguggccgcgGCGAUCGCCGUUg -3'
miRNA:   3'- aCUUGgaGAGCCCg----------UGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 143738 0.66 0.916936
Target:  5'- cGAGCUgcugccccagCUCGGGCAgcaGAuCUACCGUUu -3'
miRNA:   3'- aCUUGGa---------GAGCCCGUg--CU-GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 144509 0.67 0.872968
Target:  5'- -cGACU--UCGGGCGCGGCgACCGg- -3'
miRNA:   3'- acUUGGagAGCCCGUGCUGgUGGCag -5'
15713 5' -57.4 NC_004065.1 + 147737 0.7 0.758016
Target:  5'- cGGGCC-CUCaGGGagacCACGGCCaacACCGUCg -3'
miRNA:   3'- aCUUGGaGAG-CCC----GUGCUGG---UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 151345 0.66 0.916936
Target:  5'- aGAuacuCgCUCUCGGGCGCcgcggcgccGGCCGCUG-Cg -3'
miRNA:   3'- aCUu---G-GAGAGCCCGUG---------CUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 154671 0.67 0.907811
Target:  5'- cUGcuCCUCUCGGGCaccgugaggacgaacGCGACggaCGCCG-Cg -3'
miRNA:   3'- -ACuuGGAGAGCCCG---------------UGCUG---GUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 154774 0.69 0.785066
Target:  5'- gUGGAUaucaUUCUCGGGCGCGAauGCgGUCg -3'
miRNA:   3'- -ACUUG----GAGAGCCCGUGCUggUGgCAG- -5'
15713 5' -57.4 NC_004065.1 + 156512 0.67 0.893083
Target:  5'- gGAugCUCUCGauCGCuaaaaaaGCCACCGUCa -3'
miRNA:   3'- aCUugGAGAGCccGUGc------UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 162139 0.72 0.641774
Target:  5'- cGGACagacgCUCGGGCAaccugauCGGCCGCCGg- -3'
miRNA:   3'- aCUUGga---GAGCCCGU-------GCUGGUGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.