miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 162637 0.7 0.758016
Target:  5'- cGAucaccCCUCUCGuGuGCACG-CCgACCGUCa -3'
miRNA:   3'- aCUu----GGAGAGC-C-CGUGCuGG-UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 162797 0.66 0.932526
Target:  5'- gUGAuACC-CgCGGGCGucuCGAUCACCGUg -3'
miRNA:   3'- -ACU-UGGaGaGCCCGU---GCUGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 163371 0.66 0.932526
Target:  5'- cGAACaCUCgcCGGGCGC--CCACCG-Cg -3'
miRNA:   3'- aCUUG-GAGa-GCCCGUGcuGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 163739 0.7 0.748783
Target:  5'- cGuguCCgugaaCUCGGGCAgGGCCACCaucGUCa -3'
miRNA:   3'- aCuu-GGa----GAGCCCGUgCUGGUGG---CAG- -5'
15713 5' -57.4 NC_004065.1 + 167640 0.67 0.89937
Target:  5'- gGAugCUCgucggCGGG-ACGGCCguACCGUg -3'
miRNA:   3'- aCUugGAGa----GCCCgUGCUGG--UGGCAg -5'
15713 5' -57.4 NC_004065.1 + 169320 0.67 0.886584
Target:  5'- gGAGCgUgaCGGGCGCagcgccAUCACCGUCu -3'
miRNA:   3'- aCUUGgAgaGCCCGUGc-----UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 169445 0.68 0.851063
Target:  5'- aGAACa--UCGGGCGCc-CCGCCGUg -3'
miRNA:   3'- aCUUGgagAGCCCGUGcuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 169554 0.66 0.916936
Target:  5'- --cGCCgUCUCGGuuucuGCGCGcuguuGCCGCUGUCg -3'
miRNA:   3'- acuUGG-AGAGCC-----CGUGC-----UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 175894 0.67 0.886584
Target:  5'- cGAACCUUUgaUGGGagACGAUgAUCGUCg -3'
miRNA:   3'- aCUUGGAGA--GCCCg-UGCUGgUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 176165 0.66 0.922354
Target:  5'- gGAgugGCCaUC-CcGGCGCGACCGCCG-Cg -3'
miRNA:   3'- aCU---UGG-AGaGcCCGUGCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 176572 1.1 0.003018
Target:  5'- uUGAACCUCUCGGGCACGACCACCGUCg -3'
miRNA:   3'- -ACUUGGAGAGCCCGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 176846 0.68 0.825069
Target:  5'- uUGGACUUUuucuuguucuugggUCGGGCggACGGCUcCCGUCg -3'
miRNA:   3'- -ACUUGGAG--------------AGCCCG--UGCUGGuGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 180307 0.78 0.354273
Target:  5'- cGAACuCUCgcCGGGCAUcauggagagGACCGCCGUCa -3'
miRNA:   3'- aCUUG-GAGa-GCCCGUG---------CUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 181545 0.66 0.927551
Target:  5'- aUGAugCUCuaUCGcGGCgacuACGG-CACCGUCa -3'
miRNA:   3'- -ACUugGAG--AGC-CCG----UGCUgGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 182720 0.68 0.865859
Target:  5'- gGAucgGCCUCaCGGGCGacgccggGGCCACCGa- -3'
miRNA:   3'- aCU---UGGAGaGCCCGUg------CUGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 185476 0.66 0.922354
Target:  5'- gUGGugCgggUCGGGaggcaGCGccGCCACCGUCc -3'
miRNA:   3'- -ACUugGag-AGCCCg----UGC--UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 187373 0.76 0.43532
Target:  5'- -cAAUCUCUCGGGgggaucCACGGuCCACCGUCu -3'
miRNA:   3'- acUUGGAGAGCCC------GUGCU-GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 191234 0.66 0.937282
Target:  5'- aUGGGgCUCUgCGGGCGCcag-ACCGUCa -3'
miRNA:   3'- -ACUUgGAGA-GCCCGUGcuggUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 194441 0.68 0.851063
Target:  5'- cGGgcGCCUCggucgaagcggUUGGGCACGgcggcGCCGCCGcUCa -3'
miRNA:   3'- aCU--UGGAG-----------AGCCCGUGC-----UGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 194711 0.69 0.810974
Target:  5'- gGAcgGCgUUUCGGGCugGACCACa--- -3'
miRNA:   3'- aCU--UGgAGAGCCCGugCUGGUGgcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.