miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 194879 0.66 0.91358
Target:  5'- -uGACCagggUCUUGGGCuucggcaucgagaccACGgcGCCGCCGUCu -3'
miRNA:   3'- acUUGG----AGAGCCCG---------------UGC--UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 195691 0.66 0.916936
Target:  5'- gGcuCCUCUCGucCACG-CCGCCGUa -3'
miRNA:   3'- aCuuGGAGAGCccGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 196023 0.69 0.808441
Target:  5'- aGcACgCUCUCGGGCcaccacgugcaugaGCGcgaGCCAUCGUCg -3'
miRNA:   3'- aCuUG-GAGAGCCCG--------------UGC---UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 197672 0.66 0.922354
Target:  5'- gGGACC-CUCGccGUAcCGACCGCCGcUCg -3'
miRNA:   3'- aCUUGGaGAGCc-CGU-GCUGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 198178 0.67 0.905443
Target:  5'- cGAACUUgUCGGcCACGAUCACgugGUCg -3'
miRNA:   3'- aCUUGGAgAGCCcGUGCUGGUGg--CAG- -5'
15713 5' -57.4 NC_004065.1 + 198332 0.66 0.932526
Target:  5'- -cGGCacgCUCGGGCAcCGACgCACCuUCg -3'
miRNA:   3'- acUUGga-GAGCCCGU-GCUG-GUGGcAG- -5'
15713 5' -57.4 NC_004065.1 + 198791 0.66 0.937282
Target:  5'- aGGGCCUCUUcgcaacacaGGaGCGCGuucGCCcuguCCGUCa -3'
miRNA:   3'- aCUUGGAGAG---------CC-CGUGC---UGGu---GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 198913 0.69 0.802478
Target:  5'- -cAGCCUCUCGaucGCGCG-CCGCCGg- -3'
miRNA:   3'- acUUGGAGAGCc--CGUGCuGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 199145 0.68 0.835533
Target:  5'- cGAcGCC-CUgCGGGCGCucGAacCCGCCGUCg -3'
miRNA:   3'- aCU-UGGaGA-GCCCGUG--CU--GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 199541 0.67 0.872968
Target:  5'- cGGgcGCCUCcagcCGGGCGCGccccaucguGCCGCgGUCc -3'
miRNA:   3'- aCU--UGGAGa---GCCCGUGC---------UGGUGgCAG- -5'
15713 5' -57.4 NC_004065.1 + 200439 0.74 0.545144
Target:  5'- aGGACCg--CGGucacCGCGGCCGCCGUCa -3'
miRNA:   3'- aCUUGGagaGCCc---GUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 205132 0.66 0.921822
Target:  5'- gGAAgCUCUCGaGaGCaucuucaGCGacuuuGCCACCGUCg -3'
miRNA:   3'- aCUUgGAGAGC-C-CG-------UGC-----UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 207663 0.67 0.879878
Target:  5'- cGAACCgcaucUCUCGGGUggGACUACaucacuggacggCGUCu -3'
miRNA:   3'- aCUUGG-----AGAGCCCGugCUGGUG------------GCAG- -5'
15713 5' -57.4 NC_004065.1 + 207950 0.7 0.776166
Target:  5'- gGAGCgCg--CGGGUugGGCCGCCG-Cg -3'
miRNA:   3'- aCUUG-GagaGCCCGugCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 208004 0.66 0.916936
Target:  5'- gGGGCCguggC-CGGGUuagugccggcgGCGAUgACCGUCg -3'
miRNA:   3'- aCUUGGa---GaGCCCG-----------UGCUGgUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 209770 0.67 0.893083
Target:  5'- cGAGCgUCUUGGcaaGCACcACUGCUGUCg -3'
miRNA:   3'- aCUUGgAGAGCC---CGUGcUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 210950 0.66 0.937745
Target:  5'- cGAACCUgggcgcggucuccucCUCgucgucacagauguGGGcCACcGCCGCCGUCg -3'
miRNA:   3'- aCUUGGA---------------GAG--------------CCC-GUGcUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 223489 0.67 0.893083
Target:  5'- -aGACCgUCUCGGGaccaGCaGAUCGCCGgUCa -3'
miRNA:   3'- acUUGG-AGAGCCCg---UG-CUGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 224791 0.72 0.652587
Target:  5'- --cACCUgagCGGGCggcagcacggucACGACCGCCGUCu -3'
miRNA:   3'- acuUGGAga-GCCCG------------UGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 229488 0.66 0.937282
Target:  5'- gGGGCgCUCgcacaggGGGCGCG-CCACCG-Cg -3'
miRNA:   3'- aCUUG-GAGag-----CCCGUGCuGGUGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.