Results 21 - 40 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 194879 | 0.66 | 0.91358 |
Target: 5'- -uGACCagggUCUUGGGCuucggcaucgagaccACGgcGCCGCCGUCu -3' miRNA: 3'- acUUGG----AGAGCCCG---------------UGC--UGGUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 194711 | 0.69 | 0.810974 |
Target: 5'- gGAcgGCgUUUCGGGCugGACCACa--- -3' miRNA: 3'- aCU--UGgAGAGCCCGugCUGGUGgcag -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 194441 | 0.68 | 0.851063 |
Target: 5'- cGGgcGCCUCggucgaagcggUUGGGCACGgcggcGCCGCCGcUCa -3' miRNA: 3'- aCU--UGGAG-----------AGCCCGUGC-----UGGUGGC-AG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 191234 | 0.66 | 0.937282 |
Target: 5'- aUGGGgCUCUgCGGGCGCcag-ACCGUCa -3' miRNA: 3'- -ACUUgGAGA-GCCCGUGcuggUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 187373 | 0.76 | 0.43532 |
Target: 5'- -cAAUCUCUCGGGgggaucCACGGuCCACCGUCu -3' miRNA: 3'- acUUGGAGAGCCC------GUGCU-GGUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 185476 | 0.66 | 0.922354 |
Target: 5'- gUGGugCgggUCGGGaggcaGCGccGCCACCGUCc -3' miRNA: 3'- -ACUugGag-AGCCCg----UGC--UGGUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 182720 | 0.68 | 0.865859 |
Target: 5'- gGAucgGCCUCaCGGGCGacgccggGGCCACCGa- -3' miRNA: 3'- aCU---UGGAGaGCCCGUg------CUGGUGGCag -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 181545 | 0.66 | 0.927551 |
Target: 5'- aUGAugCUCuaUCGcGGCgacuACGG-CACCGUCa -3' miRNA: 3'- -ACUugGAG--AGC-CCG----UGCUgGUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 180307 | 0.78 | 0.354273 |
Target: 5'- cGAACuCUCgcCGGGCAUcauggagagGACCGCCGUCa -3' miRNA: 3'- aCUUG-GAGa-GCCCGUG---------CUGGUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 176846 | 0.68 | 0.825069 |
Target: 5'- uUGGACUUUuucuuguucuugggUCGGGCggACGGCUcCCGUCg -3' miRNA: 3'- -ACUUGGAG--------------AGCCCG--UGCUGGuGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 176572 | 1.1 | 0.003018 |
Target: 5'- uUGAACCUCUCGGGCACGACCACCGUCg -3' miRNA: 3'- -ACUUGGAGAGCCCGUGCUGGUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 176165 | 0.66 | 0.922354 |
Target: 5'- gGAgugGCCaUC-CcGGCGCGACCGCCG-Cg -3' miRNA: 3'- aCU---UGG-AGaGcCCGUGCUGGUGGCaG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 175894 | 0.67 | 0.886584 |
Target: 5'- cGAACCUUUgaUGGGagACGAUgAUCGUCg -3' miRNA: 3'- aCUUGGAGA--GCCCg-UGCUGgUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 169554 | 0.66 | 0.916936 |
Target: 5'- --cGCCgUCUCGGuuucuGCGCGcuguuGCCGCUGUCg -3' miRNA: 3'- acuUGG-AGAGCC-----CGUGC-----UGGUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 169445 | 0.68 | 0.851063 |
Target: 5'- aGAACa--UCGGGCGCc-CCGCCGUg -3' miRNA: 3'- aCUUGgagAGCCCGUGcuGGUGGCAg -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 169320 | 0.67 | 0.886584 |
Target: 5'- gGAGCgUgaCGGGCGCagcgccAUCACCGUCu -3' miRNA: 3'- aCUUGgAgaGCCCGUGc-----UGGUGGCAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 167640 | 0.67 | 0.89937 |
Target: 5'- gGAugCUCgucggCGGG-ACGGCCguACCGUg -3' miRNA: 3'- aCUugGAGa----GCCCgUGCUGG--UGGCAg -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 163739 | 0.7 | 0.748783 |
Target: 5'- cGuguCCgugaaCUCGGGCAgGGCCACCaucGUCa -3' miRNA: 3'- aCuu-GGa----GAGCCCGUgCUGGUGG---CAG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 163371 | 0.66 | 0.932526 |
Target: 5'- cGAACaCUCgcCGGGCGC--CCACCG-Cg -3' miRNA: 3'- aCUUG-GAGa-GCCCGUGcuGGUGGCaG- -5' |
|||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 162797 | 0.66 | 0.932526 |
Target: 5'- gUGAuACC-CgCGGGCGucuCGAUCACCGUg -3' miRNA: 3'- -ACU-UGGaGaGCCCGU---GCUGGUGGCAg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home