miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 90121 0.7 0.770768
Target:  5'- -cGACCcCUCGGGggaugcgaucacccuCACccgGACCACCGUCa -3'
miRNA:   3'- acUUGGaGAGCCC---------------GUG---CUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 88360 0.66 0.911299
Target:  5'- gGGACCgcUCUCGuccgcggccgcGGCACcGCCACCGcCc -3'
miRNA:   3'- aCUUGG--AGAGC-----------CCGUGcUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 85461 0.7 0.739455
Target:  5'- gUGAACCugacccagcugaUCUUGGGCuucGCGACCAUgGUg -3'
miRNA:   3'- -ACUUGG------------AGAGCCCG---UGCUGGUGgCAg -5'
15713 5' -57.4 NC_004065.1 + 81874 0.7 0.776166
Target:  5'- aGAGauggUUCUCGGGCACGGCgGgCGUg -3'
miRNA:   3'- aCUUg---GAGAGCCCGUGCUGgUgGCAg -5'
15713 5' -57.4 NC_004065.1 + 79728 0.71 0.720548
Target:  5'- cGAguGCUUCUCGGGCaaGCGGCgGCUGa- -3'
miRNA:   3'- aCU--UGGAGAGCCCG--UGCUGgUGGCag -5'
15713 5' -57.4 NC_004065.1 + 78853 0.67 0.872266
Target:  5'- cUGGACCUCUcccccuaCGGGaACGACCAggUGUCg -3'
miRNA:   3'- -ACUUGGAGA-------GCCCgUGCUGGUg-GCAG- -5'
15713 5' -57.4 NC_004065.1 + 74662 0.66 0.916936
Target:  5'- cGGACCg--C-GGCGCGuCCGCCGUa -3'
miRNA:   3'- aCUUGGagaGcCCGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 67591 0.68 0.858555
Target:  5'- gGGGCCUCggcUCGagauaGCGCGGCguCCGUCg -3'
miRNA:   3'- aCUUGGAG---AGCc----CGUGCUGguGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 66621 0.67 0.893083
Target:  5'- gGAGCCg--CGGGCuGCGGCgCugCGUg -3'
miRNA:   3'- aCUUGGagaGCCCG-UGCUG-GugGCAg -5'
15713 5' -57.4 NC_004065.1 + 63416 0.68 0.865138
Target:  5'- aUGAGCUUCUUGGGggguuacacccagUGCGACgCGCCGa- -3'
miRNA:   3'- -ACUUGGAGAGCCC-------------GUGCUG-GUGGCag -5'
15713 5' -57.4 NC_004065.1 + 61435 0.66 0.916936
Target:  5'- --uGCCUCcgcagcuagcacUCGGGCcgagACGcCCGCUGUCg -3'
miRNA:   3'- acuUGGAG------------AGCCCG----UGCuGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 61038 0.71 0.691682
Target:  5'- -uAACCUCUCGGaCACGcUCGCCGUg -3'
miRNA:   3'- acUUGGAGAGCCcGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 60895 0.7 0.758016
Target:  5'- cGAGCgUCUCGGGaacugcuggcCGCGGCCcgcguCUGUCa -3'
miRNA:   3'- aCUUGgAGAGCCC----------GUGCUGGu----GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 59714 0.72 0.662403
Target:  5'- cGAGCggCcgCGGcGCACGGCgACCGUCg -3'
miRNA:   3'- aCUUGgaGa-GCC-CGUGCUGgUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 59655 0.68 0.851063
Target:  5'- -cAGCCggUCUCGGaGCACG-CCACCucGUCc -3'
miRNA:   3'- acUUGG--AGAGCC-CGUGCuGGUGG--CAG- -5'
15713 5' -57.4 NC_004065.1 + 57032 0.66 0.911299
Target:  5'- cGAGCCauggCUCGucgucGGCACGACgGgcaaggccCCGUCa -3'
miRNA:   3'- aCUUGGa---GAGC-----CCGUGCUGgU--------GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 50862 0.72 0.638823
Target:  5'- gGGGCCUCUgacggagagaucgaCGGGCACGGgcgagacgguacuCCACCGcCa -3'
miRNA:   3'- aCUUGGAGA--------------GCCCGUGCU-------------GGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 50258 0.72 0.631935
Target:  5'- gGAGCaCUCgaagacgcccgauUCGGGCcccgaGACCGCCGUCc -3'
miRNA:   3'- aCUUG-GAG-------------AGCCCGug---CUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 49541 0.67 0.905443
Target:  5'- -cGACCaUCUUGGGCAgggGAUCGCCGg- -3'
miRNA:   3'- acUUGG-AGAGCCCGUg--CUGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 47368 0.67 0.893083
Target:  5'- -aGACCguaCUCcacaguccaGCGCGGCCGCCGUCg -3'
miRNA:   3'- acUUGGa--GAGcc-------CGUGCUGGUGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.