Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 50258 | 0.72 | 0.631935 |
Target: 5'- gGAGCaCUCgaagacgcccgauUCGGGCcccgaGACCGCCGUCc -3' miRNA: 3'- aCUUG-GAG-------------AGCCCGug---CUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 33392 | 0.72 | 0.623081 |
Target: 5'- gGAGCCUCUCGaGGCGCucGCC-CCGg- -3' miRNA: 3'- aCUUGGAGAGC-CCGUGc-UGGuGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 35487 | 0.72 | 0.613249 |
Target: 5'- gUGAcgACgUUCaCGGGCACGACCGgCGUCu -3' miRNA: 3'- -ACU--UG-GAGaGCCCGUGCUGGUgGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 124518 | 0.73 | 0.593631 |
Target: 5'- cUGcGCgUUCUCGGGCACGugCGCCa-- -3' miRNA: 3'- -ACuUG-GAGAGCCCGUGCugGUGGcag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 200439 | 0.74 | 0.545144 |
Target: 5'- aGGACCg--CGGucacCGCGGCCGCCGUCa -3' miRNA: 3'- aCUUGGagaGCCc---GUGCUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 81874 | 0.7 | 0.776166 |
Target: 5'- aGAGauggUUCUCGGGCACGGCgGgCGUg -3' miRNA: 3'- aCUUg---GAGAGCCCGUGCUGgUgGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 112678 | 0.69 | 0.785066 |
Target: 5'- cUGAACgC-CUCGGGCGa---CACCGUCa -3' miRNA: 3'- -ACUUG-GaGAGCCCGUgcugGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 194441 | 0.68 | 0.851063 |
Target: 5'- cGGgcGCCUCggucgaagcggUUGGGCACGgcggcGCCGCCGcUCa -3' miRNA: 3'- aCU--UGGAG-----------AGCCCGUGC-----UGGUGGC-AG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 59655 | 0.68 | 0.851063 |
Target: 5'- -cAGCCggUCUCGGaGCACG-CCACCucGUCc -3' miRNA: 3'- acUUGG--AGAGCC-CGUGCuGGUGG--CAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 20135 | 0.68 | 0.851063 |
Target: 5'- cGAACCUCucguUCGGGUAcCGugcCCAgUGUCa -3' miRNA: 3'- aCUUGGAG----AGCCCGU-GCu--GGUgGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 97632 | 0.68 | 0.851063 |
Target: 5'- aGAGCCgccCUUGcGGCACGGagaCGCCGg- -3' miRNA: 3'- aCUUGGa--GAGC-CCGUGCUg--GUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 229613 | 0.68 | 0.843386 |
Target: 5'- --cACCcCcCGGGCGCGGaaaaaCACCGUCu -3' miRNA: 3'- acuUGGaGaGCCCGUGCUg----GUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 31106 | 0.68 | 0.843386 |
Target: 5'- aGggUggagCGGGCAgGcACCACCGUCa -3' miRNA: 3'- aCuuGgagaGCCCGUgC-UGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 18124 | 0.68 | 0.843386 |
Target: 5'- aGAACCUC-CGGGCcCG-CCGCgGg- -3' miRNA: 3'- aCUUGGAGaGCCCGuGCuGGUGgCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 100960 | 0.68 | 0.827508 |
Target: 5'- gGAACUUCUCccGGCAC-AgCGCCGUCc -3' miRNA: 3'- aCUUGGAGAGc-CCGUGcUgGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 176846 | 0.68 | 0.825069 |
Target: 5'- uUGGACUUUuucuuguucuugggUCGGGCggACGGCUcCCGUCg -3' miRNA: 3'- -ACUUGGAG--------------AGCCCG--UGCUGGuGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 196023 | 0.69 | 0.808441 |
Target: 5'- aGcACgCUCUCGGGCcaccacgugcaugaGCGcgaGCCAUCGUCg -3' miRNA: 3'- aCuUG-GAGAGCCCG--------------UGC---UGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 198913 | 0.69 | 0.802478 |
Target: 5'- -cAGCCUCUCGaucGCGCG-CCGCCGg- -3' miRNA: 3'- acUUGGAGAGCc--CGUGCuGGUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 120213 | 0.69 | 0.802478 |
Target: 5'- cGAuCUUCUUGGGCG-GACCGCgCGUg -3' miRNA: 3'- aCUuGGAGAGCCCGUgCUGGUG-GCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 154774 | 0.69 | 0.785066 |
Target: 5'- gUGGAUaucaUUCUCGGGCGCGAauGCgGUCg -3' miRNA: 3'- -ACUUG----GAGAGCCCGUGCUggUGgCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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