miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 176572 1.1 0.003018
Target:  5'- uUGAACCUCUCGGGCACGACCACCGUCg -3'
miRNA:   3'- -ACUUGGAGAGCCCGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 194711 0.69 0.810974
Target:  5'- gGAcgGCgUUUCGGGCugGACCACa--- -3'
miRNA:   3'- aCU--UGgAGAGCCCGugCUGGUGgcag -5'
15713 5' -57.4 NC_004065.1 + 29694 0.68 0.834738
Target:  5'- cUGAGCCUCggcgccccgaCGGGCugGuaccucuGCCugCGUUc -3'
miRNA:   3'- -ACUUGGAGa---------GCCCGugC-------UGGugGCAG- -5'
15713 5' -57.4 NC_004065.1 + 210950 0.66 0.937745
Target:  5'- cGAACCUgggcgcggucuccucCUCgucgucacagauguGGGcCACcGCCGCCGUCg -3'
miRNA:   3'- aCUUGGA---------------GAG--------------CCC-GUGcUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 105554 0.72 0.632919
Target:  5'- cUGGACCcggCgcaGcGGCACGGCgCGCCGUCg -3'
miRNA:   3'- -ACUUGGa--Gag-C-CCGUGCUG-GUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 162139 0.72 0.641774
Target:  5'- cGGACagacgCUCGGGCAaccugauCGGCCGCCGg- -3'
miRNA:   3'- aCUUGga---GAGCCCGU-------GCUGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 79728 0.71 0.720548
Target:  5'- cGAguGCUUCUCGGGCaaGCGGCgGCUGa- -3'
miRNA:   3'- aCU--UGGAGAGCCCG--UGCUGgUGGCag -5'
15713 5' -57.4 NC_004065.1 + 85461 0.7 0.739455
Target:  5'- gUGAACCugacccagcugaUCUUGGGCuucGCGACCAUgGUg -3'
miRNA:   3'- -ACUUGG------------AGAGCCCG---UGCUGGUGgCAg -5'
15713 5' -57.4 NC_004065.1 + 162637 0.7 0.758016
Target:  5'- cGAucaccCCUCUCGuGuGCACG-CCgACCGUCa -3'
miRNA:   3'- aCUu----GGAGAGC-C-CGUGCuGG-UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 2986 0.69 0.802478
Target:  5'- -cGACCUCUCGGcGCcgACGAaCCAUCGg- -3'
miRNA:   3'- acUUGGAGAGCC-CG--UGCU-GGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 93489 0.7 0.776166
Target:  5'- gUGGcgGCCUCUuCGGGCGUGACCACacUCg -3'
miRNA:   3'- -ACU--UGGAGA-GCCCGUGCUGGUGgcAG- -5'
15713 5' -57.4 NC_004065.1 + 60895 0.7 0.758016
Target:  5'- cGAGCgUCUCGGGaacugcuggcCGCGGCCcgcguCUGUCa -3'
miRNA:   3'- aCUUGgAGAGCCC----------GUGCUGGu----GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 180307 0.78 0.354273
Target:  5'- cGAACuCUCgcCGGGCAUcauggagagGACCGCCGUCa -3'
miRNA:   3'- aCUUG-GAGa-GCCCGUG---------CUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 207950 0.7 0.776166
Target:  5'- gGAGCgCg--CGGGUugGGCCGCCG-Cg -3'
miRNA:   3'- aCUUG-GagaGCCCGugCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 16805 0.74 0.526092
Target:  5'- cGAACCa-UCGucCACGGCCGCCGUCg -3'
miRNA:   3'- aCUUGGagAGCccGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 163739 0.7 0.748783
Target:  5'- cGuguCCgugaaCUCGGGCAgGGCCACCaucGUCa -3'
miRNA:   3'- aCuu-GGa----GAGCCCGUgCUGGUGG---CAG- -5'
15713 5' -57.4 NC_004065.1 + 94606 0.69 0.788591
Target:  5'- cGAACCagcgguccgaucggcUCcugacggggUCGGGCGCGGCCggcgcgucACCGUCc -3'
miRNA:   3'- aCUUGG---------------AG---------AGCCCGUGCUGG--------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 11392 0.69 0.81932
Target:  5'- cGAacuACCUCgacgagaCGGGCAUGAUCuCCGUUc -3'
miRNA:   3'- aCU---UGGAGa------GCCCGUGCUGGuGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 6916 0.74 0.554754
Target:  5'- -cGGCUUCagcugCGGGCACGGCCucggcguccGCCGUCg -3'
miRNA:   3'- acUUGGAGa----GCCCGUGCUGG---------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 61038 0.71 0.691682
Target:  5'- -uAACCUCUCGGaCACGcUCGCCGUg -3'
miRNA:   3'- acUUGGAGAGCCcGUGCuGGUGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.