Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15713 | 5' | -57.4 | NC_004065.1 | + | 47288 | 0.68 | 0.843386 |
Target: 5'- cUGAGCUgcguUCUaCGuggguauaagaGGCGCGACCAgCGUCg -3' miRNA: 3'- -ACUUGG----AGA-GC-----------CCGUGCUGGUgGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 29694 | 0.68 | 0.834738 |
Target: 5'- cUGAGCCUCggcgccccgaCGGGCugGuaccucuGCCugCGUUc -3' miRNA: 3'- -ACUUGGAGa---------GCCCGugC-------UGGugGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 60895 | 0.7 | 0.758016 |
Target: 5'- cGAGCgUCUCGGGaacugcuggcCGCGGCCcgcguCUGUCa -3' miRNA: 3'- aCUUGgAGAGCCC----------GUGCUGGu----GGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 6916 | 0.74 | 0.554754 |
Target: 5'- -cGGCUUCagcugCGGGCACGGCCucggcguccGCCGUCg -3' miRNA: 3'- acUUGGAGa----GCCCGUGCUGG---------UGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 27282 | 0.67 | 0.89937 |
Target: 5'- cGGACggcgCUCGGGaCACGAgCCgaaacgGCCGUCc -3' miRNA: 3'- aCUUGga--GAGCCC-GUGCU-GG------UGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 144509 | 0.67 | 0.872968 |
Target: 5'- -cGACU--UCGGGCGCGGCgACCGg- -3' miRNA: 3'- acUUGGagAGCCCGUGCUGgUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 194711 | 0.69 | 0.810974 |
Target: 5'- gGAcgGCgUUUCGGGCugGACCACa--- -3' miRNA: 3'- aCU--UGgAGAGCCCGugCUGGUGgcag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 16805 | 0.74 | 0.526092 |
Target: 5'- cGAACCa-UCGucCACGGCCGCCGUCg -3' miRNA: 3'- aCUUGGagAGCccGUGCUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 182720 | 0.68 | 0.865859 |
Target: 5'- gGAucgGCCUCaCGGGCGacgccggGGCCACCGa- -3' miRNA: 3'- aCU---UGGAGaGCCCGUg------CUGGUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 180307 | 0.78 | 0.354273 |
Target: 5'- cGAACuCUCgcCGGGCAUcauggagagGACCGCCGUCa -3' miRNA: 3'- aCUUG-GAGa-GCCCGUG---------CUGGUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 11392 | 0.69 | 0.81932 |
Target: 5'- cGAacuACCUCgacgagaCGGGCAUGAUCuCCGUUc -3' miRNA: 3'- aCU---UGGAGa------GCCCGUGCUGGuGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 169445 | 0.68 | 0.851063 |
Target: 5'- aGAACa--UCGGGCGCc-CCGCCGUg -3' miRNA: 3'- aCUUGgagAGCCCGUGcuGGUGGCAg -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 207950 | 0.7 | 0.776166 |
Target: 5'- gGAGCgCg--CGGGUugGGCCGCCG-Cg -3' miRNA: 3'- aCUUG-GagaGCCCGugCUGGUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 162637 | 0.7 | 0.758016 |
Target: 5'- cGAucaccCCUCUCGuGuGCACG-CCgACCGUCa -3' miRNA: 3'- aCUu----GGAGAGC-C-CGUGCuGG-UGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 79728 | 0.71 | 0.720548 |
Target: 5'- cGAguGCUUCUCGGGCaaGCGGCgGCUGa- -3' miRNA: 3'- aCU--UGGAGAGCCCG--UGCUGgUGGCag -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 105554 | 0.72 | 0.632919 |
Target: 5'- cUGGACCcggCgcaGcGGCACGGCgCGCCGUCg -3' miRNA: 3'- -ACUUGGa--Gag-C-CCGUGCUG-GUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 18289 | 0.66 | 0.916936 |
Target: 5'- aGAucACCUCgUCGagcGGCugGACgGuCCGUCu -3' miRNA: 3'- aCU--UGGAG-AGC---CCGugCUGgU-GGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 154671 | 0.67 | 0.907811 |
Target: 5'- cUGcuCCUCUCGGGCaccgugaggacgaacGCGACggaCGCCG-Cg -3' miRNA: 3'- -ACuuGGAGAGCCCG---------------UGCUG---GUGGCaG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 175894 | 0.67 | 0.886584 |
Target: 5'- cGAACCUUUgaUGGGagACGAUgAUCGUCg -3' miRNA: 3'- aCUUGGAGA--GCCCg-UGCUGgUGGCAG- -5' |
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15713 | 5' | -57.4 | NC_004065.1 | + | 207663 | 0.67 | 0.879878 |
Target: 5'- cGAACCgcaucUCUCGGGUggGACUACaucacuggacggCGUCu -3' miRNA: 3'- aCUUGG-----AGAGCCCGugCUGGUG------------GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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