miRNA display CGI


Results 41 - 60 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 194711 0.69 0.810974
Target:  5'- gGAcgGCgUUUCGGGCugGACCACa--- -3'
miRNA:   3'- aCU--UGgAGAGCCCGugCUGGUGgcag -5'
15713 5' -57.4 NC_004065.1 + 16805 0.74 0.526092
Target:  5'- cGAACCa-UCGucCACGGCCGCCGUCg -3'
miRNA:   3'- aCUUGGagAGCccGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 105554 0.72 0.632919
Target:  5'- cUGGACCcggCgcaGcGGCACGGCgCGCCGUCg -3'
miRNA:   3'- -ACUUGGa--Gag-C-CCGUGCUG-GUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 79728 0.71 0.720548
Target:  5'- cGAguGCUUCUCGGGCaaGCGGCgGCUGa- -3'
miRNA:   3'- aCU--UGGAGAGCCCG--UGCUGgUGGCag -5'
15713 5' -57.4 NC_004065.1 + 198332 0.66 0.932526
Target:  5'- -cGGCacgCUCGGGCAcCGACgCACCuUCg -3'
miRNA:   3'- acUUGga-GAGCCCGU-GCUG-GUGGcAG- -5'
15713 5' -57.4 NC_004065.1 + 40260 0.66 0.922354
Target:  5'- gGggUUUCUgGGGCGCc-CCGCCGg- -3'
miRNA:   3'- aCuuGGAGAgCCCGUGcuGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 208004 0.66 0.916936
Target:  5'- gGGGCCguggC-CGGGUuagugccggcgGCGAUgACCGUCg -3'
miRNA:   3'- aCUUGGa---GaGCCCG-----------UGCUGgUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 18289 0.66 0.916936
Target:  5'- aGAucACCUCgUCGagcGGCugGACgGuCCGUCu -3'
miRNA:   3'- aCU--UGGAG-AGC---CCGugCUGgU-GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 154671 0.67 0.907811
Target:  5'- cUGcuCCUCUCGGGCaccgugaggacgaacGCGACggaCGCCG-Cg -3'
miRNA:   3'- -ACuuGGAGAGCCCG---------------UGCUG---GUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 90958 0.67 0.886584
Target:  5'- cGGGCCagaCGGGCACG-CUGCgGUCg -3'
miRNA:   3'- aCUUGGagaGCCCGUGCuGGUGgCAG- -5'
15713 5' -57.4 NC_004065.1 + 182720 0.68 0.865859
Target:  5'- gGAucgGCCUCaCGGGCGacgccggGGCCACCGa- -3'
miRNA:   3'- aCU---UGGAGaGCCCGUg------CUGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 47288 0.68 0.843386
Target:  5'- cUGAGCUgcguUCUaCGuggguauaagaGGCGCGACCAgCGUCg -3'
miRNA:   3'- -ACUUGG----AGA-GC-----------CCGUGCUGGUgGCAG- -5'
15713 5' -57.4 NC_004065.1 + 29694 0.68 0.834738
Target:  5'- cUGAGCCUCggcgccccgaCGGGCugGuaccucuGCCugCGUUc -3'
miRNA:   3'- -ACUUGGAGa---------GCCCGugC-------UGGugGCAG- -5'
15713 5' -57.4 NC_004065.1 + 207950 0.7 0.776166
Target:  5'- gGAGCgCg--CGGGUugGGCCGCCG-Cg -3'
miRNA:   3'- aCUUG-GagaGCCCGugCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 162637 0.7 0.758016
Target:  5'- cGAucaccCCUCUCGuGuGCACG-CCgACCGUCa -3'
miRNA:   3'- aCUu----GGAGAGC-C-CGUGCuGG-UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 209770 0.67 0.893083
Target:  5'- cGAGCgUCUUGGcaaGCACcACUGCUGUCg -3'
miRNA:   3'- aCUUGgAGAGCC---CGUGcUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 107592 0.66 0.927551
Target:  5'- aGAACUUCU---GCGCGAggcUCACCGUCa -3'
miRNA:   3'- aCUUGGAGAgccCGUGCU---GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 126163 0.68 0.851063
Target:  5'- --cGCCaugaUCgcgUGGuGCGCGAUCGCCGUCa -3'
miRNA:   3'- acuUGG----AGa--GCC-CGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 81874 0.7 0.776166
Target:  5'- aGAGauggUUCUCGGGCACGGCgGgCGUg -3'
miRNA:   3'- aCUUg---GAGAGCCCGUGCUGgUgGCAg -5'
15713 5' -57.4 NC_004065.1 + 25005 0.68 0.858555
Target:  5'- gUGGGCgUCcgUGGGCGCGGCaagggGCCGUg -3'
miRNA:   3'- -ACUUGgAGa-GCCCGUGCUGg----UGGCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.