miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 50862 0.72 0.638823
Target:  5'- gGGGCCUCUgacggagagaucgaCGGGCACGGgcgagacgguacuCCACCGcCa -3'
miRNA:   3'- aCUUGGAGA--------------GCCCGUGCU-------------GGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 90902 0.66 0.916936
Target:  5'- cUGAACgCgagCUCGGaGCA-GACCgcgucgACCGUCa -3'
miRNA:   3'- -ACUUG-Ga--GAGCC-CGUgCUGG------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 194441 0.68 0.851063
Target:  5'- cGGgcGCCUCggucgaagcggUUGGGCACGgcggcGCCGCCGcUCa -3'
miRNA:   3'- aCU--UGGAG-----------AGCCCGUGC-----UGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 126163 0.68 0.851063
Target:  5'- --cGCCaugaUCgcgUGGuGCGCGAUCGCCGUCa -3'
miRNA:   3'- acuUGG----AGa--GCC-CGUGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 34186 0.7 0.748783
Target:  5'- cGGAagaCUCggaCGGGCuCGAgCGCCGUCu -3'
miRNA:   3'- aCUUg--GAGa--GCCCGuGCUgGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 147737 0.7 0.758016
Target:  5'- cGGGCC-CUCaGGGagacCACGGCCaacACCGUCg -3'
miRNA:   3'- aCUUGGaGAG-CCC----GUGCUGG---UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 81874 0.7 0.776166
Target:  5'- aGAGauggUUCUCGGGCACGGCgGgCGUg -3'
miRNA:   3'- aCUUg---GAGAGCCCGUGCUGgUgGCAg -5'
15713 5' -57.4 NC_004065.1 + 110376 0.66 0.909565
Target:  5'- gGGACCUCUCGcgcaGGCcguucgaacacgccACGGCCGacggCGUCu -3'
miRNA:   3'- aCUUGGAGAGC----CCG--------------UGCUGGUg---GCAG- -5'
15713 5' -57.4 NC_004065.1 + 57032 0.66 0.911299
Target:  5'- cGAGCCauggCUCGucgucGGCACGACgGgcaaggccCCGUCa -3'
miRNA:   3'- aCUUGGa---GAGC-----CCGUGCUGgU--------GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 20135 0.68 0.851063
Target:  5'- cGAACCUCucguUCGGGUAcCGugcCCAgUGUCa -3'
miRNA:   3'- aCUUGGAG----AGCCCGU-GCu--GGUgGCAG- -5'
15713 5' -57.4 NC_004065.1 + 127967 0.66 0.911299
Target:  5'- aGAugCUCuUCGGcGCuaacgccCGGCCGCCG-Cg -3'
miRNA:   3'- aCUugGAG-AGCC-CGu------GCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 194879 0.66 0.91358
Target:  5'- -uGACCagggUCUUGGGCuucggcaucgagaccACGgcGCCGCCGUCu -3'
miRNA:   3'- acUUGG----AGAGCCCG---------------UGC--UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 74662 0.66 0.916936
Target:  5'- cGGACCg--C-GGCGCGuCCGCCGUa -3'
miRNA:   3'- aCUUGGagaGcCCGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 169554 0.66 0.916936
Target:  5'- --cGCCgUCUCGGuuucuGCGCGcuguuGCCGCUGUCg -3'
miRNA:   3'- acuUGG-AGAGCC-----CGUGC-----UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 195691 0.66 0.916936
Target:  5'- gGcuCCUCUCGucCACG-CCGCCGUa -3'
miRNA:   3'- aCuuGGAGAGCccGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 197672 0.66 0.922354
Target:  5'- gGGACC-CUCGccGUAcCGACCGCCGcUCg -3'
miRNA:   3'- aCUUGGaGAGCc-CGU-GCUGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 107592 0.66 0.927551
Target:  5'- aGAACUUCU---GCGCGAggcUCACCGUCa -3'
miRNA:   3'- aCUUGGAGAgccCGUGCU---GGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 163371 0.66 0.932526
Target:  5'- cGAACaCUCgcCGGGCGC--CCACCG-Cg -3'
miRNA:   3'- aCUUG-GAGa-GCCCGUGcuGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 198791 0.66 0.937282
Target:  5'- aGGGCCUCUUcgcaacacaGGaGCGCGuucGCCcuguCCGUCa -3'
miRNA:   3'- aCUUGGAGAG---------CC-CGUGC---UGGu---GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 88360 0.66 0.911299
Target:  5'- gGGACCgcUCUCGuccgcggccgcGGCACcGCCACCGcCc -3'
miRNA:   3'- aCUUGG--AGAGC-----------CCGUGcUGGUGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.