miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15713 5' -57.4 NC_004065.1 + 223489 0.67 0.893083
Target:  5'- -aGACCgUCUCGGGaccaGCaGAUCGCCGgUCa -3'
miRNA:   3'- acUUGG-AGAGCCCg---UG-CUGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 41142 0.67 0.89937
Target:  5'- gUGAGCUUCUCGuGGUACcugagccagagGACCAucUCGUUg -3'
miRNA:   3'- -ACUUGGAGAGC-CCGUG-----------CUGGU--GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 88360 0.66 0.911299
Target:  5'- gGGACCgcUCUCGuccgcggccgcGGCACcGCCACCGcCc -3'
miRNA:   3'- aCUUGG--AGAGC-----------CCGUGcUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 127967 0.66 0.911299
Target:  5'- aGAugCUCuUCGGcGCuaacgccCGGCCGCCG-Cg -3'
miRNA:   3'- aCUugGAG-AGCC-CGu------GCUGGUGGCaG- -5'
15713 5' -57.4 NC_004065.1 + 194879 0.66 0.91358
Target:  5'- -uGACCagggUCUUGGGCuucggcaucgagaccACGgcGCCGCCGUCu -3'
miRNA:   3'- acUUGG----AGAGCCCG---------------UGC--UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 74662 0.66 0.916936
Target:  5'- cGGACCg--C-GGCGCGuCCGCCGUa -3'
miRNA:   3'- aCUUGGagaGcCCGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 169554 0.66 0.916936
Target:  5'- --cGCCgUCUCGGuuucuGCGCGcuguuGCCGCUGUCg -3'
miRNA:   3'- acuUGG-AGAGCC-----CGUGC-----UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 195691 0.66 0.916936
Target:  5'- gGcuCCUCUCGucCACG-CCGCCGUa -3'
miRNA:   3'- aCuuGGAGAGCccGUGCuGGUGGCAg -5'
15713 5' -57.4 NC_004065.1 + 90902 0.66 0.916936
Target:  5'- cUGAACgCgagCUCGGaGCA-GACCgcgucgACCGUCa -3'
miRNA:   3'- -ACUUG-Ga--GAGCC-CGUgCUGG------UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 197672 0.66 0.922354
Target:  5'- gGGACC-CUCGccGUAcCGACCGCCGcUCg -3'
miRNA:   3'- aCUUGGaGAGCc-CGU-GCUGGUGGC-AG- -5'
15713 5' -57.4 NC_004065.1 + 57032 0.66 0.911299
Target:  5'- cGAGCCauggCUCGucgucGGCACGACgGgcaaggccCCGUCa -3'
miRNA:   3'- aCUUGGa---GAGC-----CCGUGCUGgU--------GGCAG- -5'
15713 5' -57.4 NC_004065.1 + 110376 0.66 0.909565
Target:  5'- gGGACCUCUCGcgcaGGCcguucgaacacgccACGGCCGacggCGUCu -3'
miRNA:   3'- aCUUGGAGAGC----CCG--------------UGCUGGUg---GCAG- -5'
15713 5' -57.4 NC_004065.1 + 139580 0.67 0.89937
Target:  5'- aGAGCa-CUCGGGagguggccgcgGCGAUCGCCGUUg -3'
miRNA:   3'- aCUUGgaGAGCCCg----------UGCUGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 109613 0.67 0.89937
Target:  5'- -cGACCcC-CGGGcCGCGgugcccACCACCGUCg -3'
miRNA:   3'- acUUGGaGaGCCC-GUGC------UGGUGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 167640 0.67 0.89937
Target:  5'- gGAugCUCgucggCGGG-ACGGCCguACCGUg -3'
miRNA:   3'- aCUugGAGa----GCCCgUGCUGG--UGGCAg -5'
15713 5' -57.4 NC_004065.1 + 49541 0.67 0.905443
Target:  5'- -cGACCaUCUUGGGCAgggGAUCGCCGg- -3'
miRNA:   3'- acUUGG-AGAGCCCGUg--CUGGUGGCag -5'
15713 5' -57.4 NC_004065.1 + 198178 0.67 0.905443
Target:  5'- cGAACUUgUCGGcCACGAUCACgugGUCg -3'
miRNA:   3'- aCUUGGAgAGCCcGUGCUGGUGg--CAG- -5'
15713 5' -57.4 NC_004065.1 + 109952 0.67 0.905443
Target:  5'- aUGAgucGCCUCUCcGGCGCGGucuCCGacgaCGUCc -3'
miRNA:   3'- -ACU---UGGAGAGcCCGUGCU---GGUg---GCAG- -5'
15713 5' -57.4 NC_004065.1 + 116512 0.67 0.905443
Target:  5'- cGAucUUUCUCGGGCAgaaGACCuuguaGCCGUUg -3'
miRNA:   3'- aCUu-GGAGAGCCCGUg--CUGG-----UGGCAG- -5'
15713 5' -57.4 NC_004065.1 + 133901 0.67 0.905443
Target:  5'- cGGGCCaccCUCGcGGaGCGACCGCC-UCg -3'
miRNA:   3'- aCUUGGa--GAGC-CCgUGCUGGUGGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.