miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15714 3' -61.6 NC_004065.1 + 181123 0.66 0.78505
Target:  5'- --aCGGgGUGGCgGCgGCGggGAGa- -3'
miRNA:   3'- aggGCCgCGCUGgCGgCGCuuCUCaa -5'
15714 3' -61.6 NC_004065.1 + 177494 0.66 0.78505
Target:  5'- --aCGGCGgGGCCGCCG-GggGucAGUa -3'
miRNA:   3'- aggGCCGCgCUGGCGGCgCuuC--UCAa -5'
15714 3' -61.6 NC_004065.1 + 45536 0.66 0.78505
Target:  5'- aCCCGGCGCcGCgGCgGCGgcGGc-- -3'
miRNA:   3'- aGGGCCGCGcUGgCGgCGCuuCUcaa -5'
15714 3' -61.6 NC_004065.1 + 45806 0.66 0.776352
Target:  5'- -gCUGGCGCcACaCGCCGCGugcGGGUg -3'
miRNA:   3'- agGGCCGCGcUG-GCGGCGCuu-CUCAa -5'
15714 3' -61.6 NC_004065.1 + 126233 0.66 0.776352
Target:  5'- --aCGGCGCGG-CGCuCGCGGAGAu-- -3'
miRNA:   3'- aggGCCGCGCUgGCG-GCGCUUCUcaa -5'
15714 3' -61.6 NC_004065.1 + 147186 0.66 0.776352
Target:  5'- cCCCGuCGCGAUuggagaCGCUGCGAGGAu-- -3'
miRNA:   3'- aGGGCcGCGCUG------GCGGCGCUUCUcaa -5'
15714 3' -61.6 NC_004065.1 + 91201 0.66 0.776352
Target:  5'- -gUCGGCGUGcgcggcaucggcGCCGCCGgaGAAGAGa- -3'
miRNA:   3'- agGGCCGCGC------------UGGCGGCg-CUUCUCaa -5'
15714 3' -61.6 NC_004065.1 + 151110 0.66 0.76754
Target:  5'- gCUCGGCGaCGACgGCagcaGCGAAGGc-- -3'
miRNA:   3'- aGGGCCGC-GCUGgCGg---CGCUUCUcaa -5'
15714 3' -61.6 NC_004065.1 + 161861 0.66 0.76754
Target:  5'- cUCCGucGCGCGcGCCGCCGCGAu----- -3'
miRNA:   3'- aGGGC--CGCGC-UGGCGGCGCUucucaa -5'
15714 3' -61.6 NC_004065.1 + 120743 0.66 0.76754
Target:  5'- gUUCGGCGUGACCcaggacacugcuGCCGCGAGucGUc -3'
miRNA:   3'- aGGGCCGCGCUGG------------CGGCGCUUcuCAa -5'
15714 3' -61.6 NC_004065.1 + 33412 0.66 0.766652
Target:  5'- cCCCGGCGCauCCGacacuCGCGAcaguaacAGAGUUg -3'
miRNA:   3'- aGGGCCGCGcuGGCg----GCGCU-------UCUCAA- -5'
15714 3' -61.6 NC_004065.1 + 30053 0.66 0.762201
Target:  5'- uUCUCGGCGCucgaucccagagacgGgACCGCCGUGGcGGAGc- -3'
miRNA:   3'- -AGGGCCGCG---------------C-UGGCGGCGCU-UCUCaa -5'
15714 3' -61.6 NC_004065.1 + 229575 0.66 0.758621
Target:  5'- cCCCGGaCGUua-CGCCGCGAGGGc-- -3'
miRNA:   3'- aGGGCC-GCGcugGCGGCGCUUCUcaa -5'
15714 3' -61.6 NC_004065.1 + 109880 0.66 0.758621
Target:  5'- -aCCGGCGUcGCCgcgGCCGCGucGGGg- -3'
miRNA:   3'- agGGCCGCGcUGG---CGGCGCuuCUCaa -5'
15714 3' -61.6 NC_004065.1 + 67554 0.66 0.749604
Target:  5'- gUCCUGGC-CGGCCGC-GCGAGGc--- -3'
miRNA:   3'- -AGGGCCGcGCUGGCGgCGCUUCucaa -5'
15714 3' -61.6 NC_004065.1 + 119825 0.66 0.746881
Target:  5'- uUCCCucucgacgggcggcGGCGCGucgcgGCCGCCGC--AGAGg- -3'
miRNA:   3'- -AGGG--------------CCGCGC-----UGGCGGCGcuUCUCaa -5'
15714 3' -61.6 NC_004065.1 + 197715 0.66 0.740495
Target:  5'- -gCCGuCGCGGCCGCCGUGAGc---- -3'
miRNA:   3'- agGGCcGCGCUGGCGGCGCUUcucaa -5'
15714 3' -61.6 NC_004065.1 + 170708 0.66 0.740495
Target:  5'- cCCgCGGCGCGAUUGCCGCu------- -3'
miRNA:   3'- aGG-GCCGCGCUGGCGGCGcuucucaa -5'
15714 3' -61.6 NC_004065.1 + 95159 0.66 0.740495
Target:  5'- uUCUCGuCGCcGCCGCCGUGcAGGGUc -3'
miRNA:   3'- -AGGGCcGCGcUGGCGGCGCuUCUCAa -5'
15714 3' -61.6 NC_004065.1 + 172064 0.67 0.731304
Target:  5'- gUCgCGGUccuccGUGGCCGCCGCGGuucGAGc- -3'
miRNA:   3'- -AGgGCCG-----CGCUGGCGGCGCUu--CUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.