miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15714 5' -44.7 NC_004065.1 + 64081 0.66 1
Target:  5'- gCAGACUCUGUuucccguACGaCGUGCGa---- -3'
miRNA:   3'- -GUUUGAGACAu------UGCcGCAUGCauuuu -5'
15714 5' -44.7 NC_004065.1 + 133726 0.67 1
Target:  5'- aCGGAgUCgUGUgGACGGCGUcCGUGAc- -3'
miRNA:   3'- -GUUUgAG-ACA-UUGCCGCAuGCAUUuu -5'
15714 5' -44.7 NC_004065.1 + 34164 0.66 1
Target:  5'- uCAGACUCUGcagaccgugaguUGACGGCGccgGCGc---- -3'
miRNA:   3'- -GUUUGAGAC------------AUUGCCGCa--UGCauuuu -5'
15714 5' -44.7 NC_004065.1 + 19566 0.66 1
Target:  5'- gGGugUCgGUGGCGGCGguaGCGUc--- -3'
miRNA:   3'- gUUugAGaCAUUGCCGCa--UGCAuuuu -5'
15714 5' -44.7 NC_004065.1 + 20416 0.66 1
Target:  5'- gCAGACagugccgCUGuUGACGGUGUACGa---- -3'
miRNA:   3'- -GUUUGa------GAC-AUUGCCGCAUGCauuuu -5'
15714 5' -44.7 NC_004065.1 + 187017 0.66 1
Target:  5'- gCAAACUgUuaGUGGCGGCGgcgcgGCGUcuGAg -3'
miRNA:   3'- -GUUUGAgA--CAUUGCCGCa----UGCAuuUU- -5'
15714 5' -44.7 NC_004065.1 + 101603 0.66 1
Target:  5'- uCAGACUCgGUGGCGGCGccGCc----- -3'
miRNA:   3'- -GUUUGAGaCAUUGCCGCa-UGcauuuu -5'
15714 5' -44.7 NC_004065.1 + 171959 0.67 0.999999
Target:  5'- gCGGGCg--GUGGCGGCGgcgGCGgcGGAg -3'
miRNA:   3'- -GUUUGagaCAUUGCCGCa--UGCauUUU- -5'
15714 5' -44.7 NC_004065.1 + 69277 0.68 0.999996
Target:  5'- aCGAACgcggaUCUGaGGCGcGCGUACGUGc-- -3'
miRNA:   3'- -GUUUG-----AGACaUUGC-CGCAUGCAUuuu -5'
15714 5' -44.7 NC_004065.1 + 12804 0.68 0.999995
Target:  5'- uGAAUg--GUGACGGUGUACGUu--- -3'
miRNA:   3'- gUUUGagaCAUUGCCGCAUGCAuuuu -5'
15714 5' -44.7 NC_004065.1 + 28773 0.68 0.999992
Target:  5'- gAGGCUCaagGUGACGGUG-ACGgagGAGAa -3'
miRNA:   3'- gUUUGAGa--CAUUGCCGCaUGCa--UUUU- -5'
15714 5' -44.7 NC_004065.1 + 76352 0.68 0.999992
Target:  5'- --uAUUCUGUAACGcGCGU-CGUAu-- -3'
miRNA:   3'- guuUGAGACAUUGC-CGCAuGCAUuuu -5'
15714 5' -44.7 NC_004065.1 + 83936 0.69 0.999985
Target:  5'- gGAGCUucCUGUA--GGCGUGCGUGu-- -3'
miRNA:   3'- gUUUGA--GACAUugCCGCAUGCAUuuu -5'
15714 5' -44.7 NC_004065.1 + 67452 0.7 0.99988
Target:  5'- aCGGAC-CUGUcggccgaggcGGCGGUGUACGUGu-- -3'
miRNA:   3'- -GUUUGaGACA----------UUGCCGCAUGCAUuuu -5'
15714 5' -44.7 NC_004065.1 + 48095 0.7 0.999843
Target:  5'- gCGGAC-CUGUGGCGGCGgcggugGCGgcGGc -3'
miRNA:   3'- -GUUUGaGACAUUGCCGCa-----UGCauUUu -5'
15714 5' -44.7 NC_004065.1 + 128920 0.72 0.999348
Target:  5'- aGGGCUCcGUuuACGGCGcACGUAAGAu -3'
miRNA:   3'- gUUUGAGaCAu-UGCCGCaUGCAUUUU- -5'
15714 5' -44.7 NC_004065.1 + 105005 0.73 0.998519
Target:  5'- -cGGCUgUGUGACgagccgcugcuGGCGUACGUGAGc -3'
miRNA:   3'- guUUGAgACAUUG-----------CCGCAUGCAUUUu -5'
15714 5' -44.7 NC_004065.1 + 31055 0.74 0.996369
Target:  5'- aGGAgUCUGuUGACGGCGUACGc---- -3'
miRNA:   3'- gUUUgAGAC-AUUGCCGCAUGCauuuu -5'
15714 5' -44.7 NC_004065.1 + 220492 0.75 0.993196
Target:  5'- aCAGACUCggacagGUGugGGCGguuccaggugUACGUAGAAa -3'
miRNA:   3'- -GUUUGAGa-----CAUugCCGC----------AUGCAUUUU- -5'
15714 5' -44.7 NC_004065.1 + 176211 1.08 0.062036
Target:  5'- cCAAACUCUGUAACGGCGUACGUAAAAa -3'
miRNA:   3'- -GUUUGAGACAUUGCCGCAUGCAUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.